| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0407 |
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| Symbol | |
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| ID | 4078801 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 418401 |
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| End bp | 419141 |
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| Gene Length | 741 bp |
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| Protein Length | 246 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638005702 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_612402 |
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| Protein GI | 99080248 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.904753 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGACC CGCGCACAGT CGTGATTTTT GGAGCCTCAG GCGGCATTGG CCGCGCCCTG
GTGGAAACCT ATGCCGGCAT GTCGGCGGTT GAGACGGTCC ATGCCGTATC CCGCGGGGGT
GACATCTCCT TTGAAGGGTC GCCCGCTGGC CAAGAGAAAA TCGCTCAACA TCAAGCAGAT
ATAACATCCG ACTCGGATCT TGAAGCACTC GCAACGCGGA TCGGTGCGGC GGAGATGGTG
ATTGTGGCAA CCGGCATTCT GACCGACCAA GAGACAGGGC TTTCACCGGA AAAGAGCTAC
CGGCATCAAG ACAAAGCCGC GTTTGAGCAG GTGTTCGGCA TCAACACGAT CGGCCCTGCG
CTGGTGGCCA AACACTTTCT GGGGCGGATG CCCCGCAAGG GACGCACGGT TTTTGCGGCA
CTGGCCGCTC GGGTGGGATC CATCAGCGAC AACGGCCTCG GCGGTTGGCA CGCCTATCGT
GCCTCCAAGG CTGCATTGTG TATGCTGATG CGCAACTACG CCATCGAGGT TGCACGCAAG
AACGAAGATG CGATCTGCGT CTGCCTGCAC CCCGGCACCG TGGACACGGG GCTTTCCGCC
CCGTTTCAGG GCAATGTTCC CGAGGGCAAA CTGTTCACGC CTGAATACTC TGCGAAATGC
CTGGCCTCCG TGCTGAGCCA GCTGACCCCC AAAGACAGCG GCAAACAGTT CGACTGGGCG
GGTGCGGAGG TACCAGCCTA A
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| Protein sequence | MTDPRTVVIF GASGGIGRAL VETYAGMSAV ETVHAVSRGG DISFEGSPAG QEKIAQHQAD
ITSDSDLEAL ATRIGAAEMV IVATGILTDQ ETGLSPEKSY RHQDKAAFEQ VFGINTIGPA
LVAKHFLGRM PRKGRTVFAA LAARVGSISD NGLGGWHAYR ASKAALCMLM RNYAIEVARK
NEDAICVCLH PGTVDTGLSA PFQGNVPEGK LFTPEYSAKC LASVLSQLTP KDSGKQFDWA
GAEVPA
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