Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0403 |
Symbol | |
ID | 4078797 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 412303 |
End bp | 413517 |
Gene Length | 1215 bp |
Protein Length | 404 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 638005698 |
Product | formate dehydrogenase gamma subunit |
Protein accession | YP_612398 |
Protein GI | 99080244 |
COG category | [C] Energy production and conversion |
COG ID | [COG2864] Cytochrome b subunit of formate dehydrogenase |
TIGRFAM ID | [TIGR01583] formate dehydrogenase, gamma subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0151738 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGCGCC TGATTTTCGT ATTCGTCCTC AAATTGGCCT TGCTTTGCGG CCTTTCTGTC AACGCGCAGG AGGCGAGCCC AGCTGCGCCA GACCGCTCCG CCACCGGCGG CGCGCAGACG CTCGAGGATA TTCTCGCGCG GCAACGTGGC GAGGATCTGG ACGACAGCTT CCGCAGCGAG GCCACGGGCA ACCCCGAGCT TGCCGCCGGG ATTGAACAGC AGCTTGGCAC CCTTGGAGGC CAGTCCGACC CCGAACTCTG GCGCGCATTG CGCTATAATT CTGCCGACAT CAGTGTTTCG GCCGGCGGCG ATGTTGCGAC GGTTCTGGTG CAGGATGGCG GCATGAGCTG GCTGAGCTTC CGCGAAGGAC CGCTGCGCCA ATATGGCGGG TGGCTCCTTT TAGGCACGAT TGCCGCGCTC GCCGTCTTCT TTGTGCTGCG GGGCCGGATC GGTATCGATG CAGACAAGAC CGGACGCACC GTGACCCGCT TTGCCTTTGT TGAGCGCATG GCCCATTGGA CGCTTGCGGG ATCGTTCATC CTGCTGGGTA TCACCGGGCT TTTGACGCTC TTTGGGCGCG TCGCAATCCT GCCCTACCTG GGCAAGGATG TGAATTCGGT GCTGCTCATC GGCTCCAAGT GGATCCACAA CTCCGTATCG TGGGCCTTCA TGCTGGCGCT GATCGTGGTC TTTTTCATGT GGGTGGCGCA TAACATCCCA AACAAGCTCG ATCTTGTCTG GCTCAAGCAG TTCGGTGGTA TCATCGGCAG CAAGCACCCG CCCGCAAAGA AATTCAACGC AGGGCAGAAG GTGATCTTCT GGTCGGTGAT CTTGCTCGGG GCCTCGATTT CCGTCTCTGG TCTGTCGCTG CTGTTTCCCT TCGAGATGCC GCTCTTTGCC AAGACCTTTG CCGCTCTGAA CAGCACGGGA ATCCCGGAAT TGCTGGGCTT TGGGGTTCTT CCCACCGAGC TTACGCCACA TGGCGAAATG CAGCTTGCAC AGCTCTGGCA CGCCATTGTC GGCTTTGTCC TTATGGCGAT CATCATCGCG CATATTTATA TCGGCTCTGT CGGCATGGAA GGCGCCTATG ATGCCATGGG GTCGGGCGAA GTGGATGAGG CCTGGGCCCA TCAGCACCAT TCGATCTGGC TCGAAGAAGT GAAGGAAAAA GAGCGCGCAA AAGGCAGCGA CGCGAGCGCC ACTCCGGCGG AGTGA
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Protein sequence | MPRLIFVFVL KLALLCGLSV NAQEASPAAP DRSATGGAQT LEDILARQRG EDLDDSFRSE ATGNPELAAG IEQQLGTLGG QSDPELWRAL RYNSADISVS AGGDVATVLV QDGGMSWLSF REGPLRQYGG WLLLGTIAAL AVFFVLRGRI GIDADKTGRT VTRFAFVERM AHWTLAGSFI LLGITGLLTL FGRVAILPYL GKDVNSVLLI GSKWIHNSVS WAFMLALIVV FFMWVAHNIP NKLDLVWLKQ FGGIIGSKHP PAKKFNAGQK VIFWSVILLG ASISVSGLSL LFPFEMPLFA KTFAALNSTG IPELLGFGVL PTELTPHGEM QLAQLWHAIV GFVLMAIIIA HIYIGSVGME GAYDAMGSGE VDEAWAHQHH SIWLEEVKEK ERAKGSDASA TPAE
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