| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0378 |
|---|
| Symbol | |
|---|
| ID | 4078611 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 388010 |
|---|
| End bp | 389620 |
|---|
| Gene Length | 1611 bp |
|---|
| Protein Length | 536 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638005673 |
|---|
| Product | glucose-6-phosphate isomerase |
|---|
| Protein accession | YP_612373 |
|---|
| Protein GI | 99080219 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0166] Glucose-6-phosphate isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.419467 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGACA TTTGGCAGCA ACTCTCAGCC CATCGCGCCG CGACCGAGGC CACCCCGCTC
ACCGACTACT TTGCTCAGGA CGCCGACAGG TTCGCGCGCT ACTCCGCCTC TGCCGGTGAG
ATGTTGCTGG ACTATTCCAA GACCGCGCTG GACGATACCG CGCGCGACCT TTTGGTCCAA
CTGGCCGAAA GCGTGGATCT GAAGTCGAGG ATCGCGGCGA TGATGTCGGG TGCCAAGATC
AATTCAACCG AGAACCGCGC CGTGCTGCAC ACGGCCCTGC GTGCGCCAAA GGATGCAGTC
ATTGAGGTGG ACGGCGAAAA CGTCGTCCCT GGCATCCAAA AGGTCCTGGC GCAGATGGGC
GCCTTTGCCA CCGCCCTGCG GGAGGGCAGC TACCAGACCA AGACCGGCAC GGCCTTCACC
GATGTTGTGA ACATCGGCAT CGGCGGCTCT GACCTTGGCC CGGTGATGGC CACGCTGGCG
CTTGCCCCCT ATCACGACGG GCCCGCCTGT CATTTTGTGT CCAACGTGGA TGGCGCGCAT
ATCCATGACG TGCTGGCCGG TCTGAACCCG GAAACCACTC TGGTCGTGAT CGCCTCCAAA
ACCTTTACCA CCATCGAGAC GATGACCAAC GCCGAGACCG CTATCCAGTG GCTCAAAGGT
GCGCTGGGTG AGGATGTTTC GACCCATCTG GCGGCCGTGT CGACAGCACT GGACAAAACG
GCCGCGATGG GCATCCCAGA CGCCCGTGTC TTTGGCTTTG CCGATTGGGT GGGCGGACGC
TACTCCATGT GGGGACCGAT CGGTCTGCCG ATCATGATTG CCGTGGGGCC GGAGTCCTTT
GGCGAATTCC TCGCAGGCGC TGCCGCGATG GATCAGCATT TCCGTGATGC GCCGCTGATG
GAAAACCTGC CTGCGCTGCT CGGGCTCATT GGCGTCTGGC ACAACAACAT CTGCGGTTAT
GGTTCGCGCG CGGTTCTGCC CTATGATCAG CGTCTGTCCC GCCTGCCCGC CTATCTTCAG
CAGCTTGATA TGGAGAGCAA CGGCAAATCC GTCGCGCTCG ATGGCAGCCC CCTGCCCCGC
GCCTCCGGTC CCGTGGTTTG GGGCGAGCCC GGCACCAACG GCCAGCACGC GTTTTACCAG
TTGTTGCATC AGGGTACGCA GGTGATCCCC ACCGAGTTCC TGATTGCCGC AACGGGTCAC
GAGCCCGAGC TGGCCCATCA GCACAATCTT CTGAAAGCCA ACTGCCTTGC TCAATCCGAA
GCGCTGATGC TGGGGCGATC CTGGGATGAG GCGCGCGAGA TTGCCATCGC GCGCGGATTT
GACGGGGTGG ATGCCGACCG TATGGCCGGG CATCTGAGCT TTCCCGGCAA CCGTCCCTCG
GTGACCCTCG CCTACCCCAA ACTGACGCCA TTCGTATTTG GTCAGATCGT TGCTCTCTAC
GAACATCGTG TGTTCACCGA AGGCGTGATC TGGGGGATCA ACTCCTTTGA TCAATGGGGG
GTTGAGCTGG GCAAAGAACT GGCGACCCGC CTTCTGCCGA TGGTCGAAGG GGCAGATGCA
TCCCAAAAAG ACGCCTCCAC CCGCGGCCTG CTCGCCAAAC TCTCCACCTG A
|
|---|
| Protein sequence | MSDIWQQLSA HRAATEATPL TDYFAQDADR FARYSASAGE MLLDYSKTAL DDTARDLLVQ
LAESVDLKSR IAAMMSGAKI NSTENRAVLH TALRAPKDAV IEVDGENVVP GIQKVLAQMG
AFATALREGS YQTKTGTAFT DVVNIGIGGS DLGPVMATLA LAPYHDGPAC HFVSNVDGAH
IHDVLAGLNP ETTLVVIASK TFTTIETMTN AETAIQWLKG ALGEDVSTHL AAVSTALDKT
AAMGIPDARV FGFADWVGGR YSMWGPIGLP IMIAVGPESF GEFLAGAAAM DQHFRDAPLM
ENLPALLGLI GVWHNNICGY GSRAVLPYDQ RLSRLPAYLQ QLDMESNGKS VALDGSPLPR
ASGPVVWGEP GTNGQHAFYQ LLHQGTQVIP TEFLIAATGH EPELAHQHNL LKANCLAQSE
ALMLGRSWDE AREIAIARGF DGVDADRMAG HLSFPGNRPS VTLAYPKLTP FVFGQIVALY
EHRVFTEGVI WGINSFDQWG VELGKELATR LLPMVEGADA SQKDASTRGL LAKLST
|
|---|
| |