| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0341 |
|---|
| Symbol | |
|---|
| ID | 4076042 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 345984 |
|---|
| End bp | 347057 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638005636 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_612336 |
|---|
| Protein GI | 99080182 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACGCG ATTTGGCTTT CTGGATCGGG CGCCTGCTTT TGGTGGTTGG GCTGCTGTCG
GGGGTGGCCC CCAGTGCTGC CCGGGCGATT TGTGATGTGG ATTATGTGGC CCAGCCGGGG
GATAATCTTT TTACCATCGC GGAAGCCCAT TACGGGGACC GCGATCGCTG GACGGTGATT
TATTATCGCA ATCAGGGCGA GCTGGCGGGG CCTTCGGTCA TTCCGGGGCG CACGCTGTTT
ATTCCCTGCC CACCCAATAT GCCAATCGAG AGCGCCCCCG CTGACGCGGT CGTGACGCAG
GAGACGACTC CGGCCCCAAC GGTGCAGCCC GCCGCAGAGC TCAATCTCTT GACCGGTGGG
CAGTATGCGC CTTTCACCGA TCCTGATCTG CCTGAACAAG GGCTCATCAC CGAGCTTGTG
CGCGCCGCGC TGGAGGTGGC CCCGTCGCCG GTGCCCTACG CGATTGGCTG GGACAATGAT
TGGAGCCAGC ATCTGTCGCC AAAGCTGGAG AGCAAGCAGT TCGACATGGG GTTTCCCTGG
GCAAAACCGG ATTGTGCGGC TGACCCGAGT GCGGTGCGCT GCATGCGCTA TCACTACTCC
GATCCGCTAA TGGAAGTCCC GGTGATGCTC TTTGTGCGCA GCGGCGGGGG CATGGTCTAC
GGCAGCGACG CGGACGTGAT TGGCAAGACT CTGTGCCGCC CGCTGCGCGA GGATGTCTTT
GATCTCGACA CAGCAGCGCG GCGCTGGATC AGCGACGACA AAGTGACCCT TGTGCAGCCT
GCCGCTGCCG GCGACTGTTT GCGAATGGTG GCCGACGGGC GTGTGGACGC GGCGGCTCTC
AATCTCTTTG TGGGGGCGAG CGCGCTGGTG GCCGAAGGGC TGCGGGGGCG GGTCGAGCCG
CTTGAAAAGC CGCTGTCGCA GGTGAGTCTC CATGTGATTA TCTCAAAGAC CCATTGGCGC
GGCACCTCTC ATCTCTATCG GATGAACGCC GGGTTGCGCC ACCTGCGCGA GAGCGGGCGA
TACGATGAAA TCGTAAGCAG ACACATGGAG TTGTTCTGGT CGGGCCTCCA ATAA
|
|---|
| Protein sequence | MQRDLAFWIG RLLLVVGLLS GVAPSAARAI CDVDYVAQPG DNLFTIAEAH YGDRDRWTVI
YYRNQGELAG PSVIPGRTLF IPCPPNMPIE SAPADAVVTQ ETTPAPTVQP AAELNLLTGG
QYAPFTDPDL PEQGLITELV RAALEVAPSP VPYAIGWDND WSQHLSPKLE SKQFDMGFPW
AKPDCAADPS AVRCMRYHYS DPLMEVPVML FVRSGGGMVY GSDADVIGKT LCRPLREDVF
DLDTAARRWI SDDKVTLVQP AAAGDCLRMV ADGRVDAAAL NLFVGASALV AEGLRGRVEP
LEKPLSQVSL HVIISKTHWR GTSHLYRMNA GLRHLRESGR YDEIVSRHME LFWSGLQ
|
|---|
| |