| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0340 |
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| Symbol | |
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| ID | 4076041 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 344893 |
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| End bp | 345972 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638005635 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | YP_612335 |
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| Protein GI | 99080181 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAAGAT TGATCGCGGC TGCGGTGCTG GGCGTGTCTG CGCTCTGGGC GCAGGCAAGT
GCAGCGCAAA CCTGTGGTGG CATGTACACG GTTCAGCCCG GAGACAGCCT CTCGGTGATT
GCGGATCGGC TCTATAAGAA TGCGGGCATG TGGACTGCGA TCCACAACCG CAACATAGCC
GCCATCGGCC CCAAACCCGG ATCGATCCGG GTGGGGATGC GGCTGGAGAT CACCTGCCTC
AATGGGTTGC CCGTTGGTCT TGAAGGCGGG CGCGCACTGA GTGCGTCCGC CCCGACAGAG
GCGACGCCGG TCCAGATCGT CGCAGGCAAT GCCACGGTGC GCCAGAAGAT CAACCTTCTG
ACGGGGGATG ATTTTGAACC CTTTACCGGA AAGTCCCTGC ACAACGGCGG GCTGCTGACG
GATCTGGTGA ATGCGGCCAT GACCGAGGCC AACCCCGCGC AGGGGTTTGC GATCCATTGG
GTCGACCATT GGGCGGCGCA TTTCGACCCG CTCTTGTCCA ATGCGCTCCT CGACATCGGG
TTTCCGTGGT ACAAACCCAA TTGCGCCGAG TTGCCAGACA ACTACCGCTG TCAGAACCTG
CTGTTCTCTG ACCCGCTTTT TGAGACCTTG ACCCTGATGT TCGCGGATGC GGCGCGCCCG
GTATCTTTTG GCAGCGACGA GGACCTCTAC GGCAAATCGA TCTGTCGCCC CAAAGGCTAT
GATACCTCTA TTTTCAACGA AAACGGCCGC AACTGGCTGC GCGAGGACAA GATCACGCTG
GTGGTCGGCG CAACGCCCGG TGACTGCTTT GACATGGTGC TTGAGGGCAA GGCCGACGGG
GTGGTGCTGA ATGAATTCAC CGGTCGCGAC AAGATGAAGG AAATGGGGAT CGTGGAGCGC
ATCCAGGTGG TGCCACAACC GATTTCGATT CAGTCGCACC ATGTGGTTGT CCATAAGTCC
CACCCGCAGG CCCAGGAGCT GTTGGCAATT GTAAACACCG GGCTGCGCGG GATCCGGGAG
GATGGCTCCT ATCAGGCCAT CGTCGAGGAC CATCTGGCAC GCGTCTGGGC CGGATTTTGA
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| Protein sequence | MRRLIAAAVL GVSALWAQAS AAQTCGGMYT VQPGDSLSVI ADRLYKNAGM WTAIHNRNIA
AIGPKPGSIR VGMRLEITCL NGLPVGLEGG RALSASAPTE ATPVQIVAGN ATVRQKINLL
TGDDFEPFTG KSLHNGGLLT DLVNAAMTEA NPAQGFAIHW VDHWAAHFDP LLSNALLDIG
FPWYKPNCAE LPDNYRCQNL LFSDPLFETL TLMFADAARP VSFGSDEDLY GKSICRPKGY
DTSIFNENGR NWLREDKITL VVGATPGDCF DMVLEGKADG VVLNEFTGRD KMKEMGIVER
IQVVPQPISI QSHHVVVHKS HPQAQELLAI VNTGLRGIRE DGSYQAIVED HLARVWAGF
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