| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0338 |
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| Symbol | |
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| ID | 4076039 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 342242 |
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| End bp | 343732 |
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| Gene Length | 1491 bp |
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| Protein Length | 496 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638005633 |
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| Product | NCS1 nucleoside transporter |
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| Protein accession | YP_612333 |
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| Protein GI | 99080179 |
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| COG category | [F] Nucleotide transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG1953] Cytosine/uracil/thiamine/allantoin permeases |
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| TIGRFAM ID | [TIGR00800] NCS1 nucleoside transporter family |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGACA TAACAAGCGG TTATGCCGCC TCAGAGGGTG CCGCGCACGC GCAGCTGGAC
CGTGCGCGCC TGGACCCCGA ACTCTATAAC GAGGATCAAC TGCCCACCAC CGCCGCCGAG
CGCACATGGA ATTGGCTGTC GATTTCGGCG CTTTGGGTCG GGATGGTGGT CTGTATCCCA
ACGTATCTTC TGGCGTCCTA TCTGATTGGC GCGGGAATGA GCTGGGATCA GGCGGTTCTG
ACCATTCTGG CGGCCAATGC CATCGTGCTC ATCCCGATGG TGCTGGTGGG CCATGCCGGC
ACCAAATACG GCATCCCGTT TCCGGTGCTG TTGCGCGCGT CCTTTGGTCC CGTGGGGGCC
AAGATCCCGG CTGTTGCCCG TGGGATCGTG GCCTGCGGCT GGTTTGGCAT CCAGACATGG
GTTGGCGGTT CTGCGATCTT TGTGATCGTC AACAAGCTCA CCGGAGGCGC GCTCGCGGCG
GAGGCGCTGC CGCTTCTGGG GATCAGCCTT GGCGAATTTG TCTGCTTCTT GGCGTTCTGG
GGCCTGCATC TCTACTTCAT CAAGAACGGC ACCGAGTCGA TCCGCTGGCT TGAGACCTAT
GCCGCGCCGT TCCTGCTGGC GATGGGGCTT GCGCTCCTGG CATGGGCCTA TTCTGCGGCG
GGCGGATTTG GCGAGATGCT CTCCACCCCC AGCGCCTTTG ATGTGGGCCA GCCCAAAGAG
GGGCAGTTCT GGGCGGTGTT CTGGCCAAGC CTGACGGGTA TGATTGGCTA TTGGGCGACG
CTTGCGCTCA ATATTCCGGA TTTCACCCGT CACGCCCGCA GCCAGAAAGA TCAGTTGGTG
GGGCAGATGG TGGGTCTGCC GATCCCGATG GCGTTGTTTG CCTTTATCGC CTCTGCTGTG
ACCTCGGCCA CGGTTGTGAT CTTTGGTGAG GCGATCTGGG ATCCGGTGCA GCTCTCTGAA
CGCATGGGCG GCTCTGCGGT GATCATCGCG CTTTTTGCGC TGATCGTGGC GACGCTGACG
ACAAACCTTG CGGCCAATGT GGTGGCCCCG GCGCATGGGT TTGCCAATCT TGCGCCAAGC
AAGATCAACC TTAAGCGTGG CGGCTATATC ACGGCAGCCA TCGGGATCGC GATGTTCCCG
TGGATTCTGG TGAACCACAT CGTTGGGTGG CTGATTGCCT ATTCCGCGCT TTTGGGGCCG
ATCGCGGGCG TGATGCTGGC GGATTATTAC CTCTTGCGCA AAACCCGGCT CGAGGTTGCG
GATCTCTTTA AATCAAACGG CATCTATGCG GGGCACAATG GCACCAACTG GGCCGGTGTC
CTGGCGCTGG TCATCGGCAT TCTGCCAAAT CTGCCGGGCT TTCTGGCCGG GGTGGGGCTT
ACGGATGGGA CCTCGCCGTT CTTTGCGATG ATCTATACCT ACGCCTGGTT TGTGGGGCTC
TTTGTTGCGG GCGCGGCCTA TTTGCTGCTC TCCAAAATGG TTAACAAATA A
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| Protein sequence | MTDITSGYAA SEGAAHAQLD RARLDPELYN EDQLPTTAAE RTWNWLSISA LWVGMVVCIP
TYLLASYLIG AGMSWDQAVL TILAANAIVL IPMVLVGHAG TKYGIPFPVL LRASFGPVGA
KIPAVARGIV ACGWFGIQTW VGGSAIFVIV NKLTGGALAA EALPLLGISL GEFVCFLAFW
GLHLYFIKNG TESIRWLETY AAPFLLAMGL ALLAWAYSAA GGFGEMLSTP SAFDVGQPKE
GQFWAVFWPS LTGMIGYWAT LALNIPDFTR HARSQKDQLV GQMVGLPIPM ALFAFIASAV
TSATVVIFGE AIWDPVQLSE RMGGSAVIIA LFALIVATLT TNLAANVVAP AHGFANLAPS
KINLKRGGYI TAAIGIAMFP WILVNHIVGW LIAYSALLGP IAGVMLADYY LLRKTRLEVA
DLFKSNGIYA GHNGTNWAGV LALVIGILPN LPGFLAGVGL TDGTSPFFAM IYTYAWFVGL
FVAGAAYLLL SKMVNK
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