| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0285 |
|---|
| Symbol | |
|---|
| ID | 4077420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 289710 |
|---|
| End bp | 291107 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638005579 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_612280 |
|---|
| Protein GI | 99080126 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.47505 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACAGG CCAAGTTTCT CAAGGGCAAC CTGCTGCGCC ATATCACGGT GATGTCGCTG
ACCTCATCGG TGGGGTTGAT GGCGGTATTT GCGGTGGATT TCATCGACAT GGTGTTCATC
GCCATGCTCG GCAAGGAAGA GCTGGCCGCG GCGGTGGGCT ATGCGGGCGC CATCCTGTTT
TTCACCACCT CCTTCAACAT CGGGATCGCC ATTGCCGCGG GCGCCCTTGT GGCGCGGGCG
CTGGGGGCCG GGGAGTCCGT TCTGGCCCGC CAGCAAGCCT CTAACGCGTT GATCTGGGGC
GGGATTTTCT CAGCCATATT TGCGCTGGTG ATCTGGTTCA ACCTCGCCTC GCTGGTGGCG
CTTTTGGGGG CAAAGGGGCG CGCGCTCGAT CTGGCGGTGG CCTATCTGCA GATCATCGTG
CCGACGCTGC CGCTCTTGCT GATGGGGATG GCCGGAGGGG CGATCCTGCG CGCCCATGGC
GATGCCCGAC GCGCCATGAT GGCAACCATT GCAGGCGGCG TGGTCAATGC AGCGCTCGAC
CCGATCCTGA TCTTCGGCTT CGATCTGGAG CTGATCGGTG CGGCCTGGGC CAGTGCCGCC
TCGCGCGTTG CGGTTGCGGT CTTTGCCCTG GGGCCAATCT TTCGCCACCA CGGCGGATTG
GAGCGCCCGC CGTTTGCGCT CTTTGTGGCC GGGCTTGCGC CGATCTTTGC GATTTCCTTT
CCCGCGATCC TGACACAGCT TGCCACGCCC GTGGGACAGG CCTTTGTCAC CCGCGCGATG
GCGGAGTTTG GTGAGGAGGC CGTGGCGGGC ATGGCCGTGA TTGCGCGGAT GTCACCGCTG
GCCTTTGGCA CCATCTTTGC GCTCTCGGGG GCGATTGGCC CTATCGTGGG GCAGAACTAC
GGGGCGGGGA ATTTTGACCG CGTGCGGCGC GCGTTCTGGG ACGCGCTCCT GTTCACGGGG
CTCTTTGTGG TGGCCGTGAC CGCGATCCTC TTTGTGTTGC GCGCGCCCAT TGCGGCGCTG
TTTGATGCGC AAGGGACCGC GCTCTCGCTG ATCTACCTCT TTTGCGGCCC GCTTGCGCTG
GCGTTTTTCT TCAACGGGGC GATTTTTGTG GCCAATGCCA GCTTTAACAA CCTCGGCCAT
CCGTTTCATT CCACATGGCT TAACTGGGGG CGGCATACCA TCGGGACCAT TCCTCTGGTC
TGGATCGGGG CGCATTTCTT TGGCGCCCCG GGCGCGCTGA TCGGCCAGGC CGTGGGCGGC
GTGATTTTTG GGCTTTTTGC GATCTGGCTT GCACGGCGGG TGATCGCAGA GGTCGAGGCG
CGCGGCGGCG CCCCCAAGGG TCCCGGCCTG TTCCAGCGTC AGGCGCGCCA GATCATCCTG
GCCTTCAGTC GTCGCTAG
|
|---|
| Protein sequence | MEQAKFLKGN LLRHITVMSL TSSVGLMAVF AVDFIDMVFI AMLGKEELAA AVGYAGAILF
FTTSFNIGIA IAAGALVARA LGAGESVLAR QQASNALIWG GIFSAIFALV IWFNLASLVA
LLGAKGRALD LAVAYLQIIV PTLPLLLMGM AGGAILRAHG DARRAMMATI AGGVVNAALD
PILIFGFDLE LIGAAWASAA SRVAVAVFAL GPIFRHHGGL ERPPFALFVA GLAPIFAISF
PAILTQLATP VGQAFVTRAM AEFGEEAVAG MAVIARMSPL AFGTIFALSG AIGPIVGQNY
GAGNFDRVRR AFWDALLFTG LFVVAVTAIL FVLRAPIAAL FDAQGTALSL IYLFCGPLAL
AFFFNGAIFV ANASFNNLGH PFHSTWLNWG RHTIGTIPLV WIGAHFFGAP GALIGQAVGG
VIFGLFAIWL ARRVIAEVEA RGGAPKGPGL FQRQARQIIL AFSRR
|
|---|
| |