| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0228 |
|---|
| Symbol | |
|---|
| ID | 4076261 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 242545 |
|---|
| End bp | 243768 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638005522 |
|---|
| Product | glycosyl transferase, group 1 |
|---|
| Protein accession | YP_612223 |
|---|
| Protein GI | 99080069 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0438] Glycosyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.219003 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTGC TCGTCGTATC GACGAATGCT GCCCTCACCA TGGGGGGCGA GGCGATGAAG
GCGCTGCAGT ATATGCAGCA GCTCTTGGCG GATGGACGCG ATGCCACTCT CATCACCCAT
GAACGCTGTC GCGAGGCTCT TGCGGGGCAA TTGCCAGAAG ATCGGGTGAT CTATGTGCAT
GACAGCCGTG CAATGAAGGC CTGTTGGCGC ACGCCGGGGC TTGGGCGGTT GGTGAACAGT
TTTTTTCACC TCGAGGTCGC CCGGATCTGT CGCGGCTTTA ACCCGAGCGA GGTGGTGATC
CACTATCTTT GTCCGATCTC CCCCGTCGAG CAGCGCTTCC CGCCGAAGGG GTATCGCTAT
GTCATCGGCC CGCTTTCAGG CAATATCTTC TACCCAGAGG GGTTTCGACA TCTTGCGGGG
CGGGGGCTGC GCCTGCAGCA TCAGGCGTAT CGGCCTTTGC AGATGGCGCT TGGCCTCTTG
TCTAGGCAAT TCACGCGCGC CTCGACCGTG TTGGTCTCTG GCTATGACCG TACCCGAGAG
GCCCTCGGCT GGGCGGGTTG CCCGGAGGCC CGCATGCAGG ACGTCTGGGA TGCGGGCCTG
TCTCCAGATT TCTTTGCGCG TTCCCGGATC CGGCCGGGCA AGAACCCGGC GCATTTTGTG
TGGATTGGAC GTATGGTGCC CTACAAGGGG GCGGATCTTG CGTTGCGCGC GCTGGCGCTT
GCCCCGGCAG AGGCACGGCT CACGCTCTAT GGAGATGGGC CGGATCGTGC CGAACTGGAG
GCGCTCGCCC GCGATCTTGG CCTGATGTCG CGGGTCACCT TTGCGGGCTG GCTTGCGCAT
GGGGATCTCT CCGAGGCGTT GGGCCAGTAC CGAGCACTTT TGTTCCCGAG CCTCAAAGAA
GCCAACGGCA TCATCGTGCA GGAATGTATG GCGATCGGCT TGCCGGTCGT GGCCTTGCGC
TGGGGCGGGC CTGTGGGGCT CGCGGATGAC ACTGAGGCGC TGTTTGTCGA GGCGCAGAAT
GCCGTACAGG TCGAGCAGGA CTTGGCTGCG GCCATGGCGC GTCTGACAGA AGACCCAGCC
CTTGCGGAGG CGCTCTCTGA TGCGGCGCGA CGCAAGGCTG AAAACGAGTT CCCCTGGCCG
CAGGTGGCCC AAAGCTGGTG CAGCGCAGCG CTTCGCGCGC AGGATGCGGC TGCAGCAGAG
CCAAAGCACC GCGGCGGGGG TTGA
|
|---|
| Protein sequence | MKLLVVSTNA ALTMGGEAMK ALQYMQQLLA DGRDATLITH ERCREALAGQ LPEDRVIYVH
DSRAMKACWR TPGLGRLVNS FFHLEVARIC RGFNPSEVVI HYLCPISPVE QRFPPKGYRY
VIGPLSGNIF YPEGFRHLAG RGLRLQHQAY RPLQMALGLL SRQFTRASTV LVSGYDRTRE
ALGWAGCPEA RMQDVWDAGL SPDFFARSRI RPGKNPAHFV WIGRMVPYKG ADLALRALAL
APAEARLTLY GDGPDRAELE ALARDLGLMS RVTFAGWLAH GDLSEALGQY RALLFPSLKE
ANGIIVQECM AIGLPVVALR WGGPVGLADD TEALFVEAQN AVQVEQDLAA AMARLTEDPA
LAEALSDAAR RKAENEFPWP QVAQSWCSAA LRAQDAAAAE PKHRGGG
|
|---|
| |