Gene TM1040_0178 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_0178 
Symbol 
ID4078786 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp198056 
End bp198667 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content66% 
IMG OID638005472 
ProductTetR family transcriptional regulator 
Protein accessionYP_612173 
Protein GI99080019 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.481499 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAAGG CGGGGCAGGT ACGGGGTCGG GGGCGTCCGC GCAAGTTCGA CGAACAGGTG 
GTGCGCCAGA CCATCCTGAG CGTGTTCTGG GAGAAGGGCT ATGCCGCTAC ATCGCTGGAT
GACCTCTCCA AGGCCACCGG CCTCGTCCGC CCCAGCCTCT ATGCGGCCTT TGGTAACAAG
GAAGAGATGT TCCTGCGCGC GATGGATGAT TTTGTCATCC GCGTGCAGAG TGATCTGAAC
CGACAAGTGC CCCGCGACGC GACGCCCGAG GACGCGTTGC GGATCATCTA CACCGCCATG
CTGGAGATCT ATAGCGGGGC GCATGCGAAG GGCTGCCTGG TTTTCTCGAC CGCTGTCGCA
GAGGCCCCCG CGCACCCGGA GATTCGCGCC CGGCTGGCCC AGCGCCTGGT GCAGACCGAC
GCGCAGTTTC GCCGCCTTTT TGACCACACC GCCCCGGGTG CATCAGAGAC CGCAAGACAG
GCCGCCGCAG AGATGGCAGC GGCGGTTCTG CATTCGCTGG GCCTGCGGGT ACGGGCAGGC
GCCGAGCCGG ATGAGGTGCG GCGCTTTATT GAAACCGCGG CCCGTTCCAT TGCCGCCGGG
CTGGCCCCCT AA
 
Protein sequence
MSKAGQVRGR GRPRKFDEQV VRQTILSVFW EKGYAATSLD DLSKATGLVR PSLYAAFGNK 
EEMFLRAMDD FVIRVQSDLN RQVPRDATPE DALRIIYTAM LEIYSGAHAK GCLVFSTAVA
EAPAHPEIRA RLAQRLVQTD AQFRRLFDHT APGASETARQ AAAEMAAAVL HSLGLRVRAG
AEPDEVRRFI ETAARSIAAG LAP