Gene TM1040_0162 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_0162 
Symbol 
ID4078770 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp178748 
End bp179851 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content63% 
IMG OID638005456 
ProductL-threonine aldolase 
Protein accessionYP_612157 
Protein GI99080003 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2008] Threonine aldolase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGCGAC ATCGAGACGA CACAGCGCCC CGGCGGCAGA AAAGGACAGC GATCATGAGC 
CAGTACACTC AGACACCCGG AGCTCGACCG CAGCAGGTGC TATGCGATCT GCGCAGCGAT
ACCGTTACGC GTCCTGATGC CGGCATGCGC GCTGTGATGG CCGACGCGGA GGTCGGGGAT
GATGTCTATG GCGAAGATCC AAGCATCAAC CGCCTCGAGT CCGCCTTGGC GGAGCGCGCA
GGAAAAGAGG CGGCTCTGTT CCTGCCCACT GGCACCCAGA GCAATCTTGT CGCCATGCTG
GCCCATTGTG GTCGCGGCGA GGAGGTGATC ACCGGGCGGG ACTACCACGT CTACAAATAC
GAGGCGGGCG GCGCCTCGGC ACTGGGCGGC GTTGTTCTGG ACGCTCTGCG CGTCTCAGAG
GATGGCGGAT TGGAGCCTGC AGAGATTGCA GCCGCCATCA AGGAAGATGA CTCGCACCAT
CCGATCTCGC GGCTGCTGTC ACTGGAGAAT ACCCACAACG GTAAGGTCGT GTCGCTGGCG
CGATTGGACA AGAGCATCGC GGTCGCGCGC GACGCCGGGC TCGCAGTGCA TCTGGATGGG
GCGCGGGTTT TCAACGCGGT GACTGCGCTG GGCTGCGAGT TGACCGACAT TGCTGGGCGC
TTTGACAGCG TCTCGATATG TCTCTCAAAA GGGCTTGGCG CGCCGGTTGG CTCTGTTCTG
GTTGGCCCCA CAGAAATCAT CGTGCGGGCG CGACGTCTGC GCAAGATGGT AGGCGGCGGC
ATGCGTCAGG CTGGTGTTCT GGCGGCAGCG GGGCTCTATG CGCTGGAGCA TAACGTGACG
CGGCTCGCAG AAGATCATGC TCGGGCAGCC GAGCTTGCTG AGACATTGCG CGGGCTCGGG
GCCGGCATGG TCGCGCACAA CACCAATATG GTGTTTTTCA CACCCGAAGC GGGGAATAAC
GCGGCGCTCG GTGCAGCGCT AGCCGAAGCT GGAGTGGTCA TCTCCGCCGG TGGCACCGGC
GCCATTCGAA TGGTGCTCCA CAAGGATGTT ACCAGTGAGG GGTTCGAAGC GACATTGGCG
GCTTTGCGAT CCCATTACGG ATAA
 
Protein sequence
MPRHRDDTAP RRQKRTAIMS QYTQTPGARP QQVLCDLRSD TVTRPDAGMR AVMADAEVGD 
DVYGEDPSIN RLESALAERA GKEAALFLPT GTQSNLVAML AHCGRGEEVI TGRDYHVYKY
EAGGASALGG VVLDALRVSE DGGLEPAEIA AAIKEDDSHH PISRLLSLEN THNGKVVSLA
RLDKSIAVAR DAGLAVHLDG ARVFNAVTAL GCELTDIAGR FDSVSICLSK GLGAPVGSVL
VGPTEIIVRA RRLRKMVGGG MRQAGVLAAA GLYALEHNVT RLAEDHARAA ELAETLRGLG
AGMVAHNTNM VFFTPEAGNN AALGAALAEA GVVISAGGTG AIRMVLHKDV TSEGFEATLA
ALRSHYG