Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0162 |
Symbol | |
ID | 4078770 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 178748 |
End bp | 179851 |
Gene Length | 1104 bp |
Protein Length | 367 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638005456 |
Product | L-threonine aldolase |
Protein accession | YP_612157 |
Protein GI | 99080003 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2008] Threonine aldolase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGCGAC ATCGAGACGA CACAGCGCCC CGGCGGCAGA AAAGGACAGC GATCATGAGC CAGTACACTC AGACACCCGG AGCTCGACCG CAGCAGGTGC TATGCGATCT GCGCAGCGAT ACCGTTACGC GTCCTGATGC CGGCATGCGC GCTGTGATGG CCGACGCGGA GGTCGGGGAT GATGTCTATG GCGAAGATCC AAGCATCAAC CGCCTCGAGT CCGCCTTGGC GGAGCGCGCA GGAAAAGAGG CGGCTCTGTT CCTGCCCACT GGCACCCAGA GCAATCTTGT CGCCATGCTG GCCCATTGTG GTCGCGGCGA GGAGGTGATC ACCGGGCGGG ACTACCACGT CTACAAATAC GAGGCGGGCG GCGCCTCGGC ACTGGGCGGC GTTGTTCTGG ACGCTCTGCG CGTCTCAGAG GATGGCGGAT TGGAGCCTGC AGAGATTGCA GCCGCCATCA AGGAAGATGA CTCGCACCAT CCGATCTCGC GGCTGCTGTC ACTGGAGAAT ACCCACAACG GTAAGGTCGT GTCGCTGGCG CGATTGGACA AGAGCATCGC GGTCGCGCGC GACGCCGGGC TCGCAGTGCA TCTGGATGGG GCGCGGGTTT TCAACGCGGT GACTGCGCTG GGCTGCGAGT TGACCGACAT TGCTGGGCGC TTTGACAGCG TCTCGATATG TCTCTCAAAA GGGCTTGGCG CGCCGGTTGG CTCTGTTCTG GTTGGCCCCA CAGAAATCAT CGTGCGGGCG CGACGTCTGC GCAAGATGGT AGGCGGCGGC ATGCGTCAGG CTGGTGTTCT GGCGGCAGCG GGGCTCTATG CGCTGGAGCA TAACGTGACG CGGCTCGCAG AAGATCATGC TCGGGCAGCC GAGCTTGCTG AGACATTGCG CGGGCTCGGG GCCGGCATGG TCGCGCACAA CACCAATATG GTGTTTTTCA CACCCGAAGC GGGGAATAAC GCGGCGCTCG GTGCAGCGCT AGCCGAAGCT GGAGTGGTCA TCTCCGCCGG TGGCACCGGC GCCATTCGAA TGGTGCTCCA CAAGGATGTT ACCAGTGAGG GGTTCGAAGC GACATTGGCG GCTTTGCGAT CCCATTACGG ATAA
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Protein sequence | MPRHRDDTAP RRQKRTAIMS QYTQTPGARP QQVLCDLRSD TVTRPDAGMR AVMADAEVGD DVYGEDPSIN RLESALAERA GKEAALFLPT GTQSNLVAML AHCGRGEEVI TGRDYHVYKY EAGGASALGG VVLDALRVSE DGGLEPAEIA AAIKEDDSHH PISRLLSLEN THNGKVVSLA RLDKSIAVAR DAGLAVHLDG ARVFNAVTAL GCELTDIAGR FDSVSICLSK GLGAPVGSVL VGPTEIIVRA RRLRKMVGGG MRQAGVLAAA GLYALEHNVT RLAEDHARAA ELAETLRGLG AGMVAHNTNM VFFTPEAGNN AALGAALAEA GVVISAGGTG AIRMVLHKDV TSEGFEATLA ALRSHYG
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