| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0149 |
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| Symbol | |
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| ID | 4078816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 163129 |
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| End bp | 165096 |
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| Gene Length | 1968 bp |
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| Protein Length | 655 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638005443 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_612144 |
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| Protein GI | 99079990 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0831767 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACGCA GACTCGCCTG CTCATTGCTG ATTTGCGCGA CCCTTTTTGG CGCGCCCGCC
CTAGCGCGCG GGCTGGACAC CGCCCTGCCC CTGATGCGCG ACGGACAATG GCAGGAGGCG
CTGATCGATG CAGGAAGCGA AGGCTCGATC CAGCGTGACA TCATCGAGTG GCATCGCCTG
CGCGCGGGTG AAGGCACGGC ACGCGATGTA TTGTCCTTCA TCGACCGCCG TCCCGACTGG
CCCGGCATGG ACTATCTGCG CCGCCAGAGC GAAGAGACTC TTGCCAAGGC CGGACACTCC
GCCATCCTCG CGTTTTATCG CGATATGCCC TCGGCCCAGA CCGCCGAAGG CGCGCTCAGC
CTCGGGGAAG CGCTGATCGA GGCCGGGCGC ACAGGCGAAG GCCAGGCAGA AATCGTGCGC
GCTTGGCGTA GCATGGCGAT GCCGCAGGAG GTCCACGACG CCTATCTAGC GCGACACAAA
ACCCTTTTGG CCGCACACCA CGAAGCACGC CTCAGCCGTT TGCTTTGGGA CGGGCACAAA
GTGTCCTCGC GTCGGATGCT GGAGCTTGTG AGCGATGGTG CGCGCAAACT GGCGGAAGCG
CGCATTGCCT TGCAGGAGCA GGCCAACGGC GTAGACGCGG CAATTGCTGC AGTGCCGGAT
GCGCTCAAGG ACGATGCAGG GCTGGCCTAT GACCGTTTCG CCTGGCGCGA CGCAAAGCGA
CGCCAGGATG ATGCGATTGC CATGATGTTT GAACGCTCCA CCTCTGCCGA GGCGCTGGGG
GAGCCGGCAA AATGGCTGCG CAGACGTGCG GATTTCGCGC GTCAGCTGAT GCGCGACAAT
GACAATACCC GCGCCTATAA GCTCGCGGCC TATCACTTTG CCACGCCCGA TGCTGGCTAT
GGCTACGCCG ACAACGAATG GATTGCGGGC TATGTCGCGT TGCGCAAGCT CGACGATGCG
GAACTTGCCG TCTATCATTT CACGCGTTTC CTTGCCGCGG TTGAAAGCCC GATCTCCGTG
GGCCGTGCCG GATATTGGCT CGGGCGGGCC TATGCGCAGC TCGGTGAGAT CGACAAGGCT
CACGCGGCCT ATCGGCTGGG GGCGAAATAT CAAAGCTCCT ATTACGGGCT GTTCTCTGCC
CAGGCGCTTG GGCGCAGCTT CGATCCGCGC CTGACCCGTC CAGAGGCCCC GAACTGGCGC
AACGCCCCAT TTTTGCAGTC CTCAGTCTAT GCCGCAGGCA TTGCCTTGCT GGAGGCCGGT
GAGGTGTCGC TTGCAGAGCG GTTCCTCACT CATCTCGTGG AAAGCCTCCC CCCGGATCAG
GCGTTGCAAC TGGGGCAGAT GGCTGTCGAC ATGAAACTGC CGCATCTGGC CGTGATGATC
TCCAAGCGAG CTGCTCAGGA CGGATTGGAG CTTGCGGGTG CCTATTACCC GCTGCATCCG
GTTACCGACC TCGACCTCCC CATGGCGCCC GAGATGGTTC TGGCGATTGC CCGCCGCGAG
AGCGAATTTG ACCCTGTGGT CGTAAGCCAT GCGGGCGCGC GCGGGTTGAT GCAAGTGATG
CCCGGCACCG CAGAACTGGT CGCCAAGGGC CTCGGCATTC TGGAGGAGCA CGCGGTCGCG
CGCCTCACCT CGGACTGGCA ATATAACGCA AAGCTGGGCG CCACCTACCT TGCGGCGCTG
GCCAAGGAAT TCGACGGCAA CGTGGTCCTG ATGGCGGCGG GCTACAACGC GGGGCCGCAC
CGTCCGATCG CCTGGATGGA ACGCTATGGT GATCCCCGTG ATCCAAAGGT CGATGTGATC
GACTGGATCG AGCACATCCC CTTTAATGAA ACCCGCAATT ACGTCATGCG CGTGACCGAG
AGCCTGCCGG TTTATCGAGC GCGGCTTGGA GAAGCGCCTC TGCCCGTGCC CTTCTCACGC
GAACTATCGG GCCGCACGCT TCAGGCTTTC GCGCCAAAAG GTGAATAG
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| Protein sequence | MTRRLACSLL ICATLFGAPA LARGLDTALP LMRDGQWQEA LIDAGSEGSI QRDIIEWHRL
RAGEGTARDV LSFIDRRPDW PGMDYLRRQS EETLAKAGHS AILAFYRDMP SAQTAEGALS
LGEALIEAGR TGEGQAEIVR AWRSMAMPQE VHDAYLARHK TLLAAHHEAR LSRLLWDGHK
VSSRRMLELV SDGARKLAEA RIALQEQANG VDAAIAAVPD ALKDDAGLAY DRFAWRDAKR
RQDDAIAMMF ERSTSAEALG EPAKWLRRRA DFARQLMRDN DNTRAYKLAA YHFATPDAGY
GYADNEWIAG YVALRKLDDA ELAVYHFTRF LAAVESPISV GRAGYWLGRA YAQLGEIDKA
HAAYRLGAKY QSSYYGLFSA QALGRSFDPR LTRPEAPNWR NAPFLQSSVY AAGIALLEAG
EVSLAERFLT HLVESLPPDQ ALQLGQMAVD MKLPHLAVMI SKRAAQDGLE LAGAYYPLHP
VTDLDLPMAP EMVLAIARRE SEFDPVVVSH AGARGLMQVM PGTAELVAKG LGILEEHAVA
RLTSDWQYNA KLGATYLAAL AKEFDGNVVL MAAGYNAGPH RPIAWMERYG DPRDPKVDVI
DWIEHIPFNE TRNYVMRVTE SLPVYRARLG EAPLPVPFSR ELSGRTLQAF APKGE
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