| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0128 |
|---|
| Symbol | |
|---|
| ID | 4078733 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 136011 |
|---|
| End bp | 136430 |
|---|
| Gene Length | 420 bp |
|---|
| Protein Length | 139 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638005416 |
|---|
| Product | NUDIX hydrolase |
|---|
| Protein accession | YP_612123 |
|---|
| Protein GI | 99079969 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1051] ADP-ribose pyrophosphatase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0968691 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTTA AGGGAGCGAA ACTGCTGCTG TTTCTCGGGC CTCATCTCCT GGTGATTCTG
CGCGACCAGA AAGCGGGTAT CCCCTTCCCC GGACACTGGG ATTTTCCGGG TGGCGGCCGG
GAGGGTGATG AAACCCCGCA GGCCTGCGCC TTGCGAGAGA CCTACGAAGA GGTCGGCCTG
ATCTTGCCCG AAAGCCGCAT TCACTACAGC CGCCGCTATC CTCGGCCTGA TGGTGCAACC
TGGTTTTTTG CGGCAGAAAT CGGCGCGCGA TGCGTGGGGG ATATCAAGTT TGGTGATGAG
GGGCAGGGCT GGGATCTGAT GACGCCCGAA GACTACATCG CGCATCCCCT CGGCATTCCG
CGATTCAAGG TCCGGTTGCA AGACTACCTC CAGAGCGGGC GCCGCGCAGC CGAGATCTGA
|
|---|
| Protein sequence | MSFKGAKLLL FLGPHLLVIL RDQKAGIPFP GHWDFPGGGR EGDETPQACA LRETYEEVGL
ILPESRIHYS RRYPRPDGAT WFFAAEIGAR CVGDIKFGDE GQGWDLMTPE DYIAHPLGIP
RFKVRLQDYL QSGRRAAEI
|
|---|
| |