Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3612 |
Symbol | |
ID | 4075039 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | + |
Start bp | 665882 |
End bp | 668194 |
Gene Length | 2313 bp |
Protein Length | 770 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 638005131 |
Product | periplasmic sensor hybrid histidine kinase |
Protein accession | YP_611841 |
Protein GI | 99078583 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.019984 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGAAAGCGC CACTGCGCAA ACTCTTACAA AGCAAAGGGA TTCTATCTCA GATCGTCGTG TCGATGTCGC TCGCGGCGCT TTTGGTCGTT GTTGCGGTCG GCGGTGTGGC CCGGCGCTAC GAGGTGGAGC GTGTCAGCGA ACAGCTGAGT GAACAGGCCA ATCTGACAGT TTCGCTGCTG AGCGGGCTCA TGCTTGAAGC GATCATTGTC GAGGATGTCC CGGTTCTGGA AACCGGTCTG GTCGAGGCGA TCACACGCTA CCCCAAAATC CTGTCGATCA ATATCGAGAA TAGCGAGGGG GAGGTCATCG CGGAGGCCTC CAATAGCGCA GCCGATGAGG CTGAGGGCTA TGTGATGTAT CGACGCCCCG TCGAGTTCGA GGGTTTTGTC TTTGGCACCA TGGTCGTGCA ATGGTCGACG GCCGAGGGTC GCGAAATCGT GCTCGACAAG GTGCGCCAAA CCATCACCTG GACCGTGTTG GCGGTGATCG CGATGTCGCT CTTGATGCTG TATCTCGTGT ATCGGTTGGC TTTGAACCCC TTGCAGATCG TGCACGCACG CATGTCTAAT GCAGTTGCGG GTGCCAAGAC CGGCCATTTC TCGCTTCCTT GGTATTCAAG CCGGGAGTTT CAGGCATTGA ATGTTTCGGT CGGCGTGTTG GAAGACAGTT TTGCCGAGCG CGACGAGCGG GAAAAAGCCC TAGAACACGC CCGTGAGCAG GCCGAGATCG CCAGCCGCGC GAAATCTGAA TTCCTCGCCA ATATGAGTCA TGAAATTCGC ACTCCGATGA ACGGTGTGAT CGGGATGGCA GAAGTGCTGC GCGAGACCGA ACTGACACCG GATCAGGAGC TCTATACCGA GACAATCGTA AAGTCCGGCA ATGCGCTGCT GAGCATCATC AACGATATTC TCAGCTTTTC AAAAATCGAA GCGGGCAAGC TCGAACTGAC ACAGGCCACC TTCAATCTGC GGACGGTGAT CGAGGATGTC ATCATGCTGC TGGCGCCCAA GGCGGCGGAA AAATGGGTTC AGCTGACCCT GCGCTATGAC CCTGATCTAG CAGAGTTTTA CGACGGTGAC GCAGGGCGTA TCCGCCAGAT CGTGACCAAT GTTGTTGGCA ATGCAGTCAA GTTCACATCG CGTGGTTCGG TACACATTGA TGTGACCGGC GTCGCACGCG GACAGCTGAT GGATCTGCGC ATTTCTGTTG TTGATACGGG CATCGGTATC CCTGCCGAAA AACTGGACCG GATCTTCCAT GCCTTTGAGC AGGTCGATGG CGCCGCGACG CGGAATTTTG AGGGGACTGG GCTGGGGCTG GCGATCTCGA CGCGACTTCT TCAGATGATG AAGGGGCGCA TCCATGTGAC GTCCAGCGAA GGCAAAGGGT CTGTCTTTAC CATCGACATT TCACTGCCAA CCAGCGACCG CGCGCCCGTC GCGTTTCTGC CTGAGCAGCC CGTCTCGGGA CTTCATGCAT TGATCGTGGA CGATCTCGAA CTCAATCGCC GGATTCTCGG GGAGCGGTTG CGCTCTTGGG GTTTGCGGGT CACCGAGGCG GCCTCTGCGA TGGAGGCCAT GCTGCATCTG GATGAAATGC GGGATGCGAC GGATACCTGC GACCTCATCT TTCTCGACTA TAACATGCCC GATTGCGATG GGTACGAATT GGCGCTGCGC ATCCGGGGGC TGCCCAATAC CGCGAGTGTG CCGATCATCG TGATTTCCTC CGTCGACCCG GCTCTGTCGC AATCGATGCT GGCAGACATC GAGGTGTGTC ATCAGGTGTT GAAGCCCGTG CGGGCAGATG ACCTGCGCGG CGTGATCAGT CAGGCGCTCG GTGCAGGTTC CGCAGTGGAA GAGCGCGCGC CTTCGGGTTC AGAAGATGCG AAGATTATGC AGCGTATCAA GGTGCTGATG GCAGAAGACA ATCGCACCAA TCAGGTCGTC GTTACGCGCA TGCTCAAGAG TGAAAGCGTG GACATCATCA TTGCGTCCAA CGGTCAGGAA GCCATTGAGA TGTATCTAAG AGAGCGCCCC GATGTCATCC TCATGGACAT GATGATGCCG GTTATGGACG GGCTCGACGC AACAAAGGCC ATTCGCAAGA TCGAAAACGA AACCGGCGTG CGCCAAGTGC CGATCATTGC GCTGACGGCG AATGCCTTGC AGAGCCACGA AGAAGCCTGT CTTGAGGTTG GCATGGATGA CTTTCTCAGT AAGCCGATCC GAAAGCAGGC GCTTCTGGAC GCGCTTCACC AATGGACCGA GGATCGCGAC TCGGCGGAGC CTCAGAACAA GCTCGAAGCC TAG
|
Protein sequence | MKAPLRKLLQ SKGILSQIVV SMSLAALLVV VAVGGVARRY EVERVSEQLS EQANLTVSLL SGLMLEAIIV EDVPVLETGL VEAITRYPKI LSINIENSEG EVIAEASNSA ADEAEGYVMY RRPVEFEGFV FGTMVVQWST AEGREIVLDK VRQTITWTVL AVIAMSLLML YLVYRLALNP LQIVHARMSN AVAGAKTGHF SLPWYSSREF QALNVSVGVL EDSFAERDER EKALEHAREQ AEIASRAKSE FLANMSHEIR TPMNGVIGMA EVLRETELTP DQELYTETIV KSGNALLSII NDILSFSKIE AGKLELTQAT FNLRTVIEDV IMLLAPKAAE KWVQLTLRYD PDLAEFYDGD AGRIRQIVTN VVGNAVKFTS RGSVHIDVTG VARGQLMDLR ISVVDTGIGI PAEKLDRIFH AFEQVDGAAT RNFEGTGLGL AISTRLLQMM KGRIHVTSSE GKGSVFTIDI SLPTSDRAPV AFLPEQPVSG LHALIVDDLE LNRRILGERL RSWGLRVTEA ASAMEAMLHL DEMRDATDTC DLIFLDYNMP DCDGYELALR IRGLPNTASV PIIVISSVDP ALSQSMLADI EVCHQVLKPV RADDLRGVIS QALGAGSAVE ERAPSGSEDA KIMQRIKVLM AEDNRTNQVV VTRMLKSESV DIIIASNGQE AIEMYLRERP DVILMDMMMP VMDGLDATKA IRKIENETGV RQVPIIALTA NALQSHEEAC LEVGMDDFLS KPIRKQALLD ALHQWTEDRD SAEPQNKLEA
|
| |