Gene TM1040_3612 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3612 
Symbol 
ID4075039 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008043 
Strand
Start bp665882 
End bp668194 
Gene Length2313 bp 
Protein Length770 aa 
Translation table11 
GC content57% 
IMG OID638005131 
Productperiplasmic sensor hybrid histidine kinase 
Protein accessionYP_611841 
Protein GI99078583 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.019984 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAAAGCGC CACTGCGCAA ACTCTTACAA AGCAAAGGGA TTCTATCTCA GATCGTCGTG 
TCGATGTCGC TCGCGGCGCT TTTGGTCGTT GTTGCGGTCG GCGGTGTGGC CCGGCGCTAC
GAGGTGGAGC GTGTCAGCGA ACAGCTGAGT GAACAGGCCA ATCTGACAGT TTCGCTGCTG
AGCGGGCTCA TGCTTGAAGC GATCATTGTC GAGGATGTCC CGGTTCTGGA AACCGGTCTG
GTCGAGGCGA TCACACGCTA CCCCAAAATC CTGTCGATCA ATATCGAGAA TAGCGAGGGG
GAGGTCATCG CGGAGGCCTC CAATAGCGCA GCCGATGAGG CTGAGGGCTA TGTGATGTAT
CGACGCCCCG TCGAGTTCGA GGGTTTTGTC TTTGGCACCA TGGTCGTGCA ATGGTCGACG
GCCGAGGGTC GCGAAATCGT GCTCGACAAG GTGCGCCAAA CCATCACCTG GACCGTGTTG
GCGGTGATCG CGATGTCGCT CTTGATGCTG TATCTCGTGT ATCGGTTGGC TTTGAACCCC
TTGCAGATCG TGCACGCACG CATGTCTAAT GCAGTTGCGG GTGCCAAGAC CGGCCATTTC
TCGCTTCCTT GGTATTCAAG CCGGGAGTTT CAGGCATTGA ATGTTTCGGT CGGCGTGTTG
GAAGACAGTT TTGCCGAGCG CGACGAGCGG GAAAAAGCCC TAGAACACGC CCGTGAGCAG
GCCGAGATCG CCAGCCGCGC GAAATCTGAA TTCCTCGCCA ATATGAGTCA TGAAATTCGC
ACTCCGATGA ACGGTGTGAT CGGGATGGCA GAAGTGCTGC GCGAGACCGA ACTGACACCG
GATCAGGAGC TCTATACCGA GACAATCGTA AAGTCCGGCA ATGCGCTGCT GAGCATCATC
AACGATATTC TCAGCTTTTC AAAAATCGAA GCGGGCAAGC TCGAACTGAC ACAGGCCACC
TTCAATCTGC GGACGGTGAT CGAGGATGTC ATCATGCTGC TGGCGCCCAA GGCGGCGGAA
AAATGGGTTC AGCTGACCCT GCGCTATGAC CCTGATCTAG CAGAGTTTTA CGACGGTGAC
GCAGGGCGTA TCCGCCAGAT CGTGACCAAT GTTGTTGGCA ATGCAGTCAA GTTCACATCG
CGTGGTTCGG TACACATTGA TGTGACCGGC GTCGCACGCG GACAGCTGAT GGATCTGCGC
ATTTCTGTTG TTGATACGGG CATCGGTATC CCTGCCGAAA AACTGGACCG GATCTTCCAT
GCCTTTGAGC AGGTCGATGG CGCCGCGACG CGGAATTTTG AGGGGACTGG GCTGGGGCTG
GCGATCTCGA CGCGACTTCT TCAGATGATG AAGGGGCGCA TCCATGTGAC GTCCAGCGAA
GGCAAAGGGT CTGTCTTTAC CATCGACATT TCACTGCCAA CCAGCGACCG CGCGCCCGTC
GCGTTTCTGC CTGAGCAGCC CGTCTCGGGA CTTCATGCAT TGATCGTGGA CGATCTCGAA
CTCAATCGCC GGATTCTCGG GGAGCGGTTG CGCTCTTGGG GTTTGCGGGT CACCGAGGCG
GCCTCTGCGA TGGAGGCCAT GCTGCATCTG GATGAAATGC GGGATGCGAC GGATACCTGC
GACCTCATCT TTCTCGACTA TAACATGCCC GATTGCGATG GGTACGAATT GGCGCTGCGC
ATCCGGGGGC TGCCCAATAC CGCGAGTGTG CCGATCATCG TGATTTCCTC CGTCGACCCG
GCTCTGTCGC AATCGATGCT GGCAGACATC GAGGTGTGTC ATCAGGTGTT GAAGCCCGTG
CGGGCAGATG ACCTGCGCGG CGTGATCAGT CAGGCGCTCG GTGCAGGTTC CGCAGTGGAA
GAGCGCGCGC CTTCGGGTTC AGAAGATGCG AAGATTATGC AGCGTATCAA GGTGCTGATG
GCAGAAGACA ATCGCACCAA TCAGGTCGTC GTTACGCGCA TGCTCAAGAG TGAAAGCGTG
GACATCATCA TTGCGTCCAA CGGTCAGGAA GCCATTGAGA TGTATCTAAG AGAGCGCCCC
GATGTCATCC TCATGGACAT GATGATGCCG GTTATGGACG GGCTCGACGC AACAAAGGCC
ATTCGCAAGA TCGAAAACGA AACCGGCGTG CGCCAAGTGC CGATCATTGC GCTGACGGCG
AATGCCTTGC AGAGCCACGA AGAAGCCTGT CTTGAGGTTG GCATGGATGA CTTTCTCAGT
AAGCCGATCC GAAAGCAGGC GCTTCTGGAC GCGCTTCACC AATGGACCGA GGATCGCGAC
TCGGCGGAGC CTCAGAACAA GCTCGAAGCC TAG
 
Protein sequence
MKAPLRKLLQ SKGILSQIVV SMSLAALLVV VAVGGVARRY EVERVSEQLS EQANLTVSLL 
SGLMLEAIIV EDVPVLETGL VEAITRYPKI LSINIENSEG EVIAEASNSA ADEAEGYVMY
RRPVEFEGFV FGTMVVQWST AEGREIVLDK VRQTITWTVL AVIAMSLLML YLVYRLALNP
LQIVHARMSN AVAGAKTGHF SLPWYSSREF QALNVSVGVL EDSFAERDER EKALEHAREQ
AEIASRAKSE FLANMSHEIR TPMNGVIGMA EVLRETELTP DQELYTETIV KSGNALLSII
NDILSFSKIE AGKLELTQAT FNLRTVIEDV IMLLAPKAAE KWVQLTLRYD PDLAEFYDGD
AGRIRQIVTN VVGNAVKFTS RGSVHIDVTG VARGQLMDLR ISVVDTGIGI PAEKLDRIFH
AFEQVDGAAT RNFEGTGLGL AISTRLLQMM KGRIHVTSSE GKGSVFTIDI SLPTSDRAPV
AFLPEQPVSG LHALIVDDLE LNRRILGERL RSWGLRVTEA ASAMEAMLHL DEMRDATDTC
DLIFLDYNMP DCDGYELALR IRGLPNTASV PIIVISSVDP ALSQSMLADI EVCHQVLKPV
RADDLRGVIS QALGAGSAVE ERAPSGSEDA KIMQRIKVLM AEDNRTNQVV VTRMLKSESV
DIIIASNGQE AIEMYLRERP DVILMDMMMP VMDGLDATKA IRKIENETGV RQVPIIALTA
NALQSHEEAC LEVGMDDFLS KPIRKQALLD ALHQWTEDRD SAEPQNKLEA