| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3578 |
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| Symbol | |
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| ID | 4075500 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 618302 |
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| End bp | 621514 |
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| Gene Length | 3213 bp |
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| Protein Length | 1070 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638005092 |
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| Product | reductive dehalogenase |
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| Protein accession | YP_611809 |
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| Protein GI | 99078551 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1018] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
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| TIGRFAM ID | [TIGR02486] reductive dehalogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.960062 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.192167 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTATTC GTTTCTTTTC TTCGCGGCAC CGGCCCGTGC ATCTGGGTCC CTTTCCGCTT
GAACGCCTGC GGCGGAGCCA TCAGGCAGAT CTGAGCAATG TGCCCGCTGC GCTGCCGCTG
AACTTTCGCC GTCCGCAAAA GCCAGACAGC ATCGTCAATG CGATGTGCGA ATATCAGGCG
ATGATGGATG CGATCCGCGA TGGGCTGGTC AATGGCACCC GCGGCGATGT GCCTGCAGAT
TTGCAGGAGC GCTCCAACCA TCTCAAGGCT TTTGGATACT TTGCGGATGC GTCGATGGTA
GGTATTGGGC CGATGCGCGA AGAGGCCCGA TTGTACGAAC CTTGGCACAA TCCCGACATC
GACCGGCTGG CGGAGGACCT GAAAACCCGT CAGACCAAAA CGCTGGCTTC GGGCATCGAC
ATGATCATGG CGGATCTCAA GGATGCGATG CAGGCTCCGC CCACGACCAT CGGGGCGCAC
CGTCATGCCA TTGTGTTCCT TTATGAGATG CCGCGCGATC CGCGCCCGGA CGAGGCGGGC
TGTGACTGGA TCACGGATGC GGAAGCACAT CGCGCCTGTT TGCGCAGCGC CGAAACGGCT
GTGGTTCTGG CCAATTACAT CCGTCTGCTG GGGTGGGATG CCAAGGCCCA CACTGGGACA
TCTTCGGATG TGGACCTCAA CCGGCTTGCG GTTGCGGCCG GGCTTGTGCG TATGGAGGAG
GGCCAGCTGG TTGCGCCCTA TCTCGGTACA CGGTTTGGTC TGGCGGCTGT CACCACGGAT
TTTGAACTGG CAGAAGACCG CCCGCTTGCC CCTCTCTCTG AACAGCCAGG TCGCGCAGGG
CGCGATCTGC GCTGGTGGCT TGGCGCTGGT GCAGAGCGTT CTGCCTTGAA TGGTGACCCC
TATAAGGATC GCGACTTTCG CGATGGTCCA CACCCGTTTG AAACGCTGAA ACGAGTGGAA
ACTCCGACCA CCTATATTGA TGAGGCGCGT GTCGCGCGGG TGCCAAAGCG GGCGGATATG
TTCGCGCGGG CTCAGTTCGG CGACATGGGC AAGGGCAATC AGAAGGCGGC GACCGGGGGC
TTTTATGTGC GCAAAGCGGC GCCCGCGATG GCGCAACGGC GCATGCTGGG CGCTTTCGTG
CTGTTGCAGG ACGGAACACC CGCCGTGGGA CCGCGCCCCA CCGATGCTCA GCGCAACGCT
GATATGGTGA AAGCTGCGTC TTACTGGCTG GGGATCGATG CGGTTGGCAT CAGCCGGTGT
CCGGATTGGA CTTGGTACAG TCACGATGCC ACCGGGACGC CTATCGTGCC GGATCAGCCG
CATGCGATCT CGATGATTGT GGATCAGGGA TTTGACACCA CTGAAGGCAC TTCGGGTGAT
GACTGGATCG CTGTAGCGCA ATCCATGCGG GCCTATCTTC GGTTCTCTCT TCTGGGGGGC
GTGATCGCGC GGCAAATTCG CAACCTCGGC TACAAGGCCA AGGCCCATAC CGTGATGGAT
GGCGAAGTGT TGCAGCCGCC GCTGTTGCTA CTCTCCGGAC TGGGAGAGGT CTCGCGGATC
GGCGAGGTCA TCCTGAATCC CTTCCTCGGC CCACGCCTCA AGTCCGGTGT GGTGACGACC
GATATGCCCA TGGCGCATGA TAAACCGATT GATTTTGGTC TGCAGAGCTT TTGCGAGTCT
TGTAACAAAT GCGCGCGCGA ATGCCCGTCT GGCGCCATCA CAGCCGGTCC AAAGCTGATG
TTCAACGGCT ACGAGATCTG GAAATCTGAC AGCCAGAAAT GTACGACCTA TCGGATCACC
ACGCCCGGTG GGGCGATGTG CGGACGTTGC ATGAAGACTT GCCCATGGAA CCTCGAAGGC
ATTTTCGCCG AAAAGCCGTT TCGATGGGCT GCGATGAATA TGCCCAGGGC CGCTCCGGCC
TTGGCGCGGC TCGACGATAT GCTGGGCAAT GGCGAGATGA ACCCGGCCAA AAAATGGTGG
TGGGACCTCG AGCTCGAAGA AGATGGCGGC TATCGCCCGA CGCGGCATCC GGTGAATGCG
CGCAGCCTGC AAAAAGATCT CGATCTGCGC TACGAGGATC AGACTTTGGC GGTCTATCCT
GCTCCGCTCG CTCCGCACCC CTATCCCTAT CCCTTCCCGA TGGATCGCGA AGCTGGGATC
GAAGCCTATC AGGCCATGAT CACGGCCGAA GAATACCAGG AACGCAAGGC GCGCGGCGAA
ACCGGGGATT GGGATCACAT CTATAAGAAT GACGCCGAGA GCCCTGTGTT GCAGGTGGTG
GTTTCCAAAG TCGAGGAGAT GGCAGAGGGC GTCACCAAAT ACGAATTCCG TGCTGCCGAC
GGTGCCGATC TGCCCGAGTG GACAGCGGGC GCACATCTCG ACATCGTGGT CGCGCCGGAG
TTCCTGCGCC AGTATTCCAT GTCCGGAAAT CCGGCGGATC GCTCTCACTA TCAGATCGGT
GTTCTCCGAG AAGATGCCGG TCGGGGCGGC TCCAAGCTAT TGCACCGGAT CTTCTCCGAA
GGCCGCCGGA TCTTTGTTTC ACGCCCGATC AATCACTTTC CACTGGACGA GACCGCGACC
AGGACTTTCC TCATGGGGGG GGGGATCGGT GTCACCCCGA TGATCGCAAT GGCGCATAGG
TTGCATGCGC TTGGGGCGGA TTTTGAGTTT CACTATTCCA TCAAGTCCCG CGCACTTGGG
GGGTATCTTC GGGACCTTGC TGACGTTCCC TGGGCGTCCA AGGTGAATTT GCATGTGTCA
GACGAGGGCA GCCGGGCGAA CTTCGACCAG ATCTTGGGCC AGTATCAGTC CGGTTGGCAC
CTTTATACCT GTGGTGCTGC TCCTTACATG GATGCGGTCA TGCAGGCGGC AGAACAGGCG
GGTTTCCCGG AAGAGGCACG CCATCTGGAG TATTTCTCGG TGCCCGAGCA GCCGGAGTAC
GAAAACCATC CCTTCACGCT CAAGCTTGCC CGGTCAGGTC GCGAACTCCA GGTGCGCGCG
GAGCAGACGG CAACCGACGC ATTGGCGGAG CACGGCATTC ATGTGGATGT GAAATGTGCG
GATGGGATCT GTGGCGTCTG CAAGTGCGGG CTGATTTCTG GCGAGGTGGA GCACCGCGAT
TTTGTGTTGT CCAAGGCGCA ACGCCGCGAG TCTATTGTCC TTTGTCAGTC TAGGGCGGCG
GATCCTGGTG GCTGCGTTGA AATCGATCTC TGA
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| Protein sequence | MSIRFFSSRH RPVHLGPFPL ERLRRSHQAD LSNVPAALPL NFRRPQKPDS IVNAMCEYQA
MMDAIRDGLV NGTRGDVPAD LQERSNHLKA FGYFADASMV GIGPMREEAR LYEPWHNPDI
DRLAEDLKTR QTKTLASGID MIMADLKDAM QAPPTTIGAH RHAIVFLYEM PRDPRPDEAG
CDWITDAEAH RACLRSAETA VVLANYIRLL GWDAKAHTGT SSDVDLNRLA VAAGLVRMEE
GQLVAPYLGT RFGLAAVTTD FELAEDRPLA PLSEQPGRAG RDLRWWLGAG AERSALNGDP
YKDRDFRDGP HPFETLKRVE TPTTYIDEAR VARVPKRADM FARAQFGDMG KGNQKAATGG
FYVRKAAPAM AQRRMLGAFV LLQDGTPAVG PRPTDAQRNA DMVKAASYWL GIDAVGISRC
PDWTWYSHDA TGTPIVPDQP HAISMIVDQG FDTTEGTSGD DWIAVAQSMR AYLRFSLLGG
VIARQIRNLG YKAKAHTVMD GEVLQPPLLL LSGLGEVSRI GEVILNPFLG PRLKSGVVTT
DMPMAHDKPI DFGLQSFCES CNKCARECPS GAITAGPKLM FNGYEIWKSD SQKCTTYRIT
TPGGAMCGRC MKTCPWNLEG IFAEKPFRWA AMNMPRAAPA LARLDDMLGN GEMNPAKKWW
WDLELEEDGG YRPTRHPVNA RSLQKDLDLR YEDQTLAVYP APLAPHPYPY PFPMDREAGI
EAYQAMITAE EYQERKARGE TGDWDHIYKN DAESPVLQVV VSKVEEMAEG VTKYEFRAAD
GADLPEWTAG AHLDIVVAPE FLRQYSMSGN PADRSHYQIG VLREDAGRGG SKLLHRIFSE
GRRIFVSRPI NHFPLDETAT RTFLMGGGIG VTPMIAMAHR LHALGADFEF HYSIKSRALG
GYLRDLADVP WASKVNLHVS DEGSRANFDQ ILGQYQSGWH LYTCGAAPYM DAVMQAAEQA
GFPEEARHLE YFSVPEQPEY ENHPFTLKLA RSGRELQVRA EQTATDALAE HGIHVDVKCA
DGICGVCKCG LISGEVEHRD FVLSKAQRRE SIVLCQSRAA DPGGCVEIDL
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