| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3532 |
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| Symbol | |
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| ID | 4075211 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 567761 |
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| End bp | 568780 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638005047 |
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| Product | LacI family transcription regulator |
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| Protein accession | YP_611766 |
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| Protein GI | 99078508 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.895947 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACACC GTTTTCCAAT CAAGGAGATC GCGCGGCAGG CGGGTCTTGG CACCGCCACT
GTCGATCGGG TCCTGAATGA CCGGGCGCAT GTGAGCCCGC AGACAAAGCT GCGTGTTACC
GCTGCAATAA AAGAGTTGAA GGCCCAAGAG GCCCAGCTTG CTGCTCATGG AAGGCGATTG
TTCTTTGACT TCGTCGTTGA AGCGCCATCA CGCTTCAGCC TTGAAGTGAA GGCGGCCGCA
GAAGCAGTAC TCCCTCAGAT CGGAACCGCT GTTTGCCGCC CTCGATTTCT GCTGCAGGAG
ATCATGGAAG AGGATGAGGT CGTCGGGGCA CTGAAACGGA TCATGAAGCG AGGTAGTCAG
GGCGTGTGTC TAAAGGCGCG GGACACGGCG CGGATTAGGG AAGCAGCGAA GACGCTGACC
GCCGCAAAAA TCCCCGTGGT CACGCTGGTC ACCGACATCG GGGGTACTGA TCGTCTTGCC
TACGTCGGGT TAGACAACGC CGGTGCAGGA CGCACTGCAG CCTACCTTAT CTCCCGAGCG
CTTGGGGATG TGCAGGGAAT GGTCTTGGCC ACGCGCAGCC ATGAACGCTT TCTAGGAGAA
GAAGAGCGCG AGTTCGCATT TGTCGAAACC TTGGCACGCG AGCGTCCAGG TCTACAGGTA
TTTGCTGTCC AGGGCGGTAG TGGAGTGGAC TTTGAAACGT CAAAGCTCTT AACGAAGTCC
ATGGTTGGCA TTCACCATCT GCGCGCGGTC TATTCGATGG GGGGTGGCAA CCTATCGATC
CTACGCACGC TGGAGCACAA AGGTCTGAGC CCCGATGTGT ACGTGGCCCA TGATCTTGAT
CGGGAAAACA GGGAGCTGAT CCAGGACCGG CGCATCGACT TCATCCTGCA TCACGATTTG
CAGCTGGACG TACGGAACAC GTTCAACGCC TTTCTATCCT ATCATGGGCT GTCCAGTGGT
CTTGTGGGGG CGCCGATCTC CACGGTCCAG GTGCTGACAC CGGAGAATAT ACCGCGTTGA
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| Protein sequence | MTHRFPIKEI ARQAGLGTAT VDRVLNDRAH VSPQTKLRVT AAIKELKAQE AQLAAHGRRL
FFDFVVEAPS RFSLEVKAAA EAVLPQIGTA VCRPRFLLQE IMEEDEVVGA LKRIMKRGSQ
GVCLKARDTA RIREAAKTLT AAKIPVVTLV TDIGGTDRLA YVGLDNAGAG RTAAYLISRA
LGDVQGMVLA TRSHERFLGE EEREFAFVET LARERPGLQV FAVQGGSGVD FETSKLLTKS
MVGIHHLRAV YSMGGGNLSI LRTLEHKGLS PDVYVAHDLD RENRELIQDR RIDFILHHDL
QLDVRNTFNA FLSYHGLSSG LVGAPISTVQ VLTPENIPR
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