| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3492 |
|---|
| Symbol | |
|---|
| ID | 4075132 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | + |
|---|
| Start bp | 524505 |
|---|
| End bp | 526412 |
|---|
| Gene Length | 1908 bp |
|---|
| Protein Length | 635 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638005007 |
|---|
| Product | Beta-galactosidase |
|---|
| Protein accession | YP_611726 |
|---|
| Protein GI | 99078468 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1874] Beta-galactosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGAA CCCTTGGCAC CTGCTATTAC CCCGAGCACT GGCCAGAAGA GATCTGGGCC
GAAGACGCCG CGCGTATGAA AGCTGCGGGC CTGACGTGGA TCCGGATTGG GGAATTTTCG
TGGTCGAAAC TCGAACCCAC TCCCGGCGAT CTGCACTGGG ACTGGCTCGA CCGCGCGATC
GAGACATTGG GGGCGCAAGG CTTGCGGGTG GTGCTCGGCA CCCCCACAGC GACCCCGCCG
CGCTGGATGG CCGAGCGTCA CCCGGACATG TTTGCTGTCA CCGCCGAGGG CCAGCCACGC
GGCTTTGGCT CCCGGCGGCA CTATTGCTTT AGCCACAAGG GTTATTTTGC CGAGAGCCAG
CGCATCACCC GCCTGATGGC AGAGCGCTAT GGTGCCAACC CGCATGTGGC CGCGTGGCAG
ACCGACAATG AATATGGCTG CCATGATACC GTGATCAGCT ATTCCGACGC GGCTCAAACC
GCTTTTCGGG CGTGGCTGGC AGAGCAGTTC GACGGCGAGA TCGGCGCGCT CAACGCGGCC
TGGGGCAATA TGTTCTGGTC CATGGAGTAT CGCAGCTTTG ACGAAATCGG CCTGCCCAAC
CTCACCGTGA CGGAGCCGAA CCCGGCGCAT GTGCTGGCGT TCAGACGCTT CAGCTCCGAT
CAGGTGGTGG CTTTCAACCG CGCGCAGGTC GAGATCATCA AGGCCCATTC AACCGCGCCG
ATTTCTCATA ACTACATGGG GCGGATCACC GATTTCGACC ACTTCAAACT AGGTGAGGAT
CTCGAGATCG CGACCTGGGA CAGCTACCCG CTGGGCTTTC TGGAAGACCG CGTGGGGGCC
TCACCCGAGG AACAGCGCGC TTATGCCCGG CAGGGGGATC CGGATTTTCA GGCCCTTCAT
CACGATCTCT ATCGCGCGGT TGGGCGCGGG CGCTGGTGGG TCATGGAACA GCAGCCGGGG
CCAGTGAACT GGGCGCCCTA CAACCCGGCA CCCCTGCCGG GCATGGTGCG GCTCTGGACC
TGGGAGGCCT TTGCCCATGG CGCCGAGGCT GTGTGTTATT TCCGCTGGCG GCAGGCGCCT
TTTGCGCAGG AACAGATGCA CGCAGGCCTC TTGCGTCCCG ACAGCCAGGA CGCCCCCGCC
ATGCAAGAAG CGATGGATGT TGCGGCAGAG CTTGGCGCGG CAGCCGATGT GCAGCCCGCG
CAGGCACCGG TGGCGATCCT TTTTGATTAC GATGCCGATT GGGCGTGGTC GACGCAGCCG
CATGGTGCAG GGCTGAGCTA TTTCCAGCTG ATCCTCGAAC ACTACAAGGC GCTTCGGCGC
GCTGGTCAGA CCATCGACAT CCTGCCCCCG GAGACCCGCG ATTTCACGGG GTACAAGATG
ATCCTTGCGC CCGGGATGAT GCATCTGCCA GAGCCCCTCA AAGAAGCGCT CGCAAGAAGT
GAGGCCGAGG TGCTCTATGG TCCGCGCAGC GGTGCGCGTG ACGGTCATTT CTCCATCCCG
ACCAGCCCAC TGCCACCTGC ATTGCCGGGG CTGGACGTGA CCGTGGCACG GGTGGAGAGT
CTGCGCCCGG ATATGCCCAT CGCCCTTAAG GGCGGTGGTG CAGTGCGCGG CTATCTTGAG
GAGCTTGAAG GCACTGCAGA AGTGGTCTTT GAAACCTCCG AGGGCGCGGC GGTCGCGCTC
CGGGCCGGGC GACAGACTTA TTGTGGCGGC TGGCTCGATG CAGAGGGGCT TGATCGGTTG
ATTGCCACCG TTGCGCAGGC GGCGGGTCTG GAGTTGCGCC AGATGCCGGA AGGGGTGCGC
ACCCGCCGCA CGGCAACCGA GGTCTTCTGG TTCAACCACA GCGCAGAGCC TGTCGAAACC
GAAGTTGGCC TCTTGCCTCC GGCGGGGGTG AAACGGATCG CGCTTTAG
|
|---|
| Protein sequence | MKRTLGTCYY PEHWPEEIWA EDAARMKAAG LTWIRIGEFS WSKLEPTPGD LHWDWLDRAI
ETLGAQGLRV VLGTPTATPP RWMAERHPDM FAVTAEGQPR GFGSRRHYCF SHKGYFAESQ
RITRLMAERY GANPHVAAWQ TDNEYGCHDT VISYSDAAQT AFRAWLAEQF DGEIGALNAA
WGNMFWSMEY RSFDEIGLPN LTVTEPNPAH VLAFRRFSSD QVVAFNRAQV EIIKAHSTAP
ISHNYMGRIT DFDHFKLGED LEIATWDSYP LGFLEDRVGA SPEEQRAYAR QGDPDFQALH
HDLYRAVGRG RWWVMEQQPG PVNWAPYNPA PLPGMVRLWT WEAFAHGAEA VCYFRWRQAP
FAQEQMHAGL LRPDSQDAPA MQEAMDVAAE LGAAADVQPA QAPVAILFDY DADWAWSTQP
HGAGLSYFQL ILEHYKALRR AGQTIDILPP ETRDFTGYKM ILAPGMMHLP EPLKEALARS
EAEVLYGPRS GARDGHFSIP TSPLPPALPG LDVTVARVES LRPDMPIALK GGGAVRGYLE
ELEGTAEVVF ETSEGAAVAL RAGRQTYCGG WLDAEGLDRL IATVAQAAGL ELRQMPEGVR
TRRTATEVFW FNHSAEPVET EVGLLPPAGV KRIAL
|
|---|
| |