| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3475 |
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| Symbol | |
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| ID | 4075109 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 499399 |
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| End bp | 500814 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638004984 |
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| Product | polysaccharide deacetylase |
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| Protein accession | YP_611709 |
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| Protein GI | 99078451 |
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| COG category | [G] Carbohydrate transport and metabolism
[S] Function unknown |
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| COG ID | [COG0726] Predicted xylanase/chitin deacetylase
[COG3195] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03164] OHCU decarboxylase
[TIGR03212] putative urate catabolism protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.40619 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACACGCT ATCCCCGCGA CATGCGCGGC TACGGCGCAA CGCCCCCCCA CCCTGCCTGG
CCAAATGGCG CAAAGATCGC CGTGCAATTT GTCCTGAACT ACGAGGAAGG GGGCGAGAAC
TGCACCCTGC ACGGGGATGC GGCCTCCGAG GCGTTTCTCT CCGACATCCC CGGCGCTGCG
CAATGGCCGG GCCAGCGCCA CTGGAACATG GAGTCGATCT ATGAATATGG CGCGCGCGCA
GGCTTTTGGC GTCTGCACCG CCTGTTCACC GGCGCGGGCA TCCCGCTGAC CATCTACGGC
GTCGCCAGTG CGCTTGCCCG CAGCCCCGAG CAGCTGAAGG CGATGAAGGA CGCCGACTGG
GAAATCGCCT CTCATGGTCT CAAATGGGTC GAACACAAGG ACATGGCCGA GGACGACGAG
CGCGCCTCCA TCAAAGAGGC GATCCGCCTA CATACCGAAG TGGTCGGCAC CCGCCCCCGC
GGCTGGTACA CCGGGCGCTG CAGCGCCAAT ACGGTGCGGC TCGTCGCCGA GGAAGGCGGA
TTTGACTATA TCTCCGACAC CTATGATGAC GACCTGCCCT ATTGGCTCGA GGTGGGCGCG
CGCGATCAGC TCATCATTCC CTACACGCTT GAAGCCAACG ACATGCGCTT TGCCACCGCG
CCGGGCTGGG TCACGGGATC TGATTTTGGG GACTATCTGA CCGACGCCTT TGATACGCTC
TACTCCGAAG GCGCGGCGGG GGCGCCCAAG ATGATGACCA TCGGTTTGCA CTGCCGCCTG
ATCGGGCGTC CGGGCAAGAT CGCCGCGCTC AAACGCTTTA TCGACCATAT CCAGAGCCAT
CCGGGCGTCT GGTGCCCGCG CCGCATCGAT ATCGCCGAAC ATTGGGCCAC AGAGCATCCG
CATCAGCGCC GCCAGCGCCC GAGCCAGATG GACCGAGACA CATTTGTGGG CGCTTATGGG
TCAATCTTTG AGCACTCCCC CTGGATTGCT GATCGCGCCT TTGATCTCGA ACTTGGACCC
GCGCATGATT GCGCGGCGGG CGTGCATAAT GCGCTCTGCC GGATCTTCCG CAGCGCATCC
GAGGACGAAC GCCTCGGCGT TTTGACCGCG CACCCGGATC TTGCGGGCAA ACTCGCCTCT
GCCGGACGCC TCACCGCCGA GAGCACCTCG GAACAGGCCA GTGCCGGGCT CAACCTTCTG
ACCGACGCGG AGCGCGAGAC CTTTACCGCG CTCAACACCG CCTACGTGGA AAAGCACGGC
TTTCCCTTCA TCATCGCGGT GCGCGATCAC GACAAGGCGT CGATCATGGC GGCCTTCAAG
CGCCGCATCG ACAATGACCG CGCCGCGGAA TTTGACGAGG CCTGCAGACA GGTCGAGCGC
ATCGCAGAGT TTCGCCTGAT GGACCTCCTG CCATGA
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| Protein sequence | MTRYPRDMRG YGATPPHPAW PNGAKIAVQF VLNYEEGGEN CTLHGDAASE AFLSDIPGAA
QWPGQRHWNM ESIYEYGARA GFWRLHRLFT GAGIPLTIYG VASALARSPE QLKAMKDADW
EIASHGLKWV EHKDMAEDDE RASIKEAIRL HTEVVGTRPR GWYTGRCSAN TVRLVAEEGG
FDYISDTYDD DLPYWLEVGA RDQLIIPYTL EANDMRFATA PGWVTGSDFG DYLTDAFDTL
YSEGAAGAPK MMTIGLHCRL IGRPGKIAAL KRFIDHIQSH PGVWCPRRID IAEHWATEHP
HQRRQRPSQM DRDTFVGAYG SIFEHSPWIA DRAFDLELGP AHDCAAGVHN ALCRIFRSAS
EDERLGVLTA HPDLAGKLAS AGRLTAESTS EQASAGLNLL TDAERETFTA LNTAYVEKHG
FPFIIAVRDH DKASIMAAFK RRIDNDRAAE FDEACRQVER IAEFRLMDLL P
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