| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3459 |
|---|
| Symbol | |
|---|
| ID | 4075093 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | + |
|---|
| Start bp | 482089 |
|---|
| End bp | 483111 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638004968 |
|---|
| Product | aspartate-semialdehyde dehydrogenase |
|---|
| Protein accession | YP_611693 |
|---|
| Protein GI | 99078435 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0136] Aspartate-semialdehyde dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01296] aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTTATC GCGTCGTTGT CGCCGGCGCC ACGGGGAACG TGGGCCGTGA AATGCTGAAC
ATCCTGGCCG AGCGCCAGTT CCCGGTGGAT GAGATTGCCG TTCTGGCATC CCGTCGTTCG
CTGGGTACTG AGGTCACATT TGGCGACAAG ACCCTGAAGA CCCAGGATCT CGACACCTTT
GACTTCACGG GGTGGGACAT GGCGCTCTTT GCCATTGGTT CGGACGCCAC GAAGAAATAC
GCGCCCAAGG CGGCGGCGGC GGGCTGTGTC GTGATCGACA ACTCTTCGCT TTATCGCTAC
GACCCGGATA TTCCGCTGAT CGTGCCCGAG GTGAACCCGG AGGCCGTGCA CGGCTATTCC
AAGAAGAACA TCATCGCCAA CCCCAACTGC TCCACCGCGC AGATGGTTGT GGCGCTGAAG
CCCTTGCATG ACCGCGCCAA GATCAAACGC GTTGTGGTCT CGACCTACCA GTCTGTTTCC
GGCTCCGGCA AGGACGCCAT CGACGAGCTC TGGGATCAGA CCAAGGCGCA TTACAATCCG
ACCGACGATT ACCAGCGCAA GGTCTACCCC AAGGACATCG CCTTCAACGT GATTCCGCAT
ATCGACGTGT TCCTCGACGA TGGCTCCACC AAAGAAGAGT GGAAGATGGT TGCGGAAACC
AAGAAGATCG TGGACCCGTC CATCAAGCTG ACCGCGACCT GCGTGCGCGT GCCGGTGTTT
GTGGGCCATT CCGAGGCGAT CAACATCGAG TTTGAGGACT TCCTTGATGA AGACGAGGCC
CGCGACATCC TGCGCGAGGC ACCGGGCATC ATGGTGATCG ACAAGCGCGA AGACGGCGGC
TACGTGACGC CGAAAGAATG CGTTGGCGAT TTTGCGACTT TCATCAGCCG CATCCGTCAG
GACTCGACGC TGGATAACGG CCTGAACCTG TGGTGTGTGT CGGACAACCT GCGCAAGGGC
GCCGCCCTCA ACGCCGTGCA GATCGCAGAG CTGTTGGGCC GTGAAGTCCT GAAGAAGGGC
TGA
|
|---|
| Protein sequence | MGYRVVVAGA TGNVGREMLN ILAERQFPVD EIAVLASRRS LGTEVTFGDK TLKTQDLDTF
DFTGWDMALF AIGSDATKKY APKAAAAGCV VIDNSSLYRY DPDIPLIVPE VNPEAVHGYS
KKNIIANPNC STAQMVVALK PLHDRAKIKR VVVSTYQSVS GSGKDAIDEL WDQTKAHYNP
TDDYQRKVYP KDIAFNVIPH IDVFLDDGST KEEWKMVAET KKIVDPSIKL TATCVRVPVF
VGHSEAINIE FEDFLDEDEA RDILREAPGI MVIDKREDGG YVTPKECVGD FATFISRIRQ
DSTLDNGLNL WCVSDNLRKG AALNAVQIAE LLGREVLKKG
|
|---|
| |