| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3428 |
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| Symbol | |
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| ID | 4075602 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 450816 |
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| End bp | 452498 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638004937 |
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| Product | tetratricopeptide TPR_2 |
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| Protein accession | YP_611662 |
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| Protein GI | 99078404 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0384278 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATTG CGTTTTCTCC CCGCGATCTG ACCCCGCTCT ATGCTTCGGC GGTTGCGCTG
CTCAATGCGG GCAATCTTGC AGCAGCGAGG GAACAGCTTT TGCGGTCTTT GCATGAAGAA
GGGGAGACGG CGCTCAGCTA CCACTATCTC GCGCAGATCC TCGAGCGCGC CGGTGGGCCC
GGCACCGAGG TGCTGGCGGC GCAGGCCAAT GCGTTGAAAT GTGCGCCCAA CCACCCGGTG
TTTCTGGCAG CACTCGGTGT GCGCTTGGTT GATGCCGGGC GCGATCAAGA TGCGCTTGTG
CTCCTCAGGA AGGCGCTGGA GATCGACCCC CAAAACCCTC TGGCGCTCCC CTGGGTCATG
CGGCTCAATC GCCGCTACTT GCAGTGGACC TCATATGAGG AAGAGGCCGC AGCATGTGAG
ATGCTCCTCA AGAGCGCGCA CAAGGTGGAT CCGCTGCTCT CGCTGACATT TGTGGATGAT
CCAGCCCAGC AGTTGAAGAT CGCCGCACGC AGCGCGCCCG ATGTCGCCGT TCAGCCGCTG
GAGCCGCATG CCCCGCATGA AAAGATCCGT GTCGGGTATT TCTCGGCAGA TTTCAGCGAA
CATGCCACGA TGCATCTGAT CGAAGGGCTG ATTGAGGCGC ACGACAAAGG CGTCTTTGAA
TTCCATGTGT ATGATTTCAA ACCGGATCCC ACGTCTCGCC AGCATCAGAT CATCCGTGAT
TTTGCAGATT GCTATCACGA CGTTAGTGCG CTTTCGGCCG CAGAAACGGC CGCGTTGGCC
CGCCAGGAGC AGCTTGATAT TGCCGTTGAT CTCAAGGGGA TCACCACCGA CTCGCGACCA
ATGATCTTTG CGCTCCGGGT CGCGCCTGTG CAGGTTTCAT TTCTGGGATT TCCAGGCACA
ACCGCGATTG CGGAAATGGA CTATATGATC GCGGATCGCA TCACCATTCC TGACGGGGAT
GAACGGTTTT ACAGCGAAAA GATTCTCCGC CTGCCGGGAT GCTACCAGCC CAACACGAAT
TCGCGCATCC TGCCTGAGGG GGCAGGTGGG CGCGCCGCCT TTGGCCTGCC GGACGACCGG
TTTGTATTCG CGAGCTTCAA TCATCCGCAC AAGGTTGGCC CGAGCGAATT TGCAACTTGG
ATGGAGATTT TGCGCGAGGT GCCGCAGGCG GTGCTCCTGT TCTATTCCGG AAAGGCGGAC
CTGGGCGCCG CGCTGGCCGA ACGAGCCCAG GCCCACGGGG TTGAGCCGTC GCGGGTCTTG
GCCTGCGGCC CGCTTCCCCA GACGGCGCAT CTGGAGCGGA TCGCGCAGGT CGATCTTTGT
CTGGATTGTT TTGCCTACAA TGCCCATACC ACCGCTTCGG ATGCGGTCTG GGCGGGGGTG
CCCTTGCTGA CGCTTGCAGG TCGTCAGTTT GCGGCACGCG TTGCGACCAG CATCCTGTCT
ACGGCGGGTG TGCCGGAACT CTCGACGGTC TCGACCAAGG ACTATGTGGC AAAGGCGGTG
CATCTTGCCA CCCACCCAGA GGATCTTCTG GCCCTAAGGC AGAAAATTTC AGCGGCGCGG
CACGGCTCGC CTCTCTTTGA TACCAAGCGC TGGACCCGTG ACTACGAGGC TCTCTTGCAG
ATGTGCTATC AACGCCACCG GGCCGGTGAG GCACCCGACC ACATGTCCCT CAGCGACGGC
TGA
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| Protein sequence | MTIAFSPRDL TPLYASAVAL LNAGNLAAAR EQLLRSLHEE GETALSYHYL AQILERAGGP
GTEVLAAQAN ALKCAPNHPV FLAALGVRLV DAGRDQDALV LLRKALEIDP QNPLALPWVM
RLNRRYLQWT SYEEEAAACE MLLKSAHKVD PLLSLTFVDD PAQQLKIAAR SAPDVAVQPL
EPHAPHEKIR VGYFSADFSE HATMHLIEGL IEAHDKGVFE FHVYDFKPDP TSRQHQIIRD
FADCYHDVSA LSAAETAALA RQEQLDIAVD LKGITTDSRP MIFALRVAPV QVSFLGFPGT
TAIAEMDYMI ADRITIPDGD ERFYSEKILR LPGCYQPNTN SRILPEGAGG RAAFGLPDDR
FVFASFNHPH KVGPSEFATW MEILREVPQA VLLFYSGKAD LGAALAERAQ AHGVEPSRVL
ACGPLPQTAH LERIAQVDLC LDCFAYNAHT TASDAVWAGV PLLTLAGRQF AARVATSILS
TAGVPELSTV STKDYVAKAV HLATHPEDLL ALRQKISAAR HGSPLFDTKR WTRDYEALLQ
MCYQRHRAGE APDHMSLSDG
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