| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3421 |
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| Symbol | |
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| ID | 4075595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 444126 |
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| End bp | 445271 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638004930 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_611655 |
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| Protein GI | 99078397 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.159892 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.759602 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTCTT CTATTGATCG CAGAACGGAT CAATTTTGCG CGTGGATCCG CCTTAACTGT
CTGCTTATAT GCGCGTTGAC TGCGCTTCCT TTGTCTGCCG CAGCACAAGA CCAAAATGCC
GCGCCGCCAC CGCCTGCCGT CACCGTTGCA ATCATTGAGG AGCGAAACTT TCAAGAAGCC
GAAACTTTTT CGGGTCGCAT CGAGGCCATT CAATCCGTCG ATCTGATCGC GCGCGTGCAA
GGTTATCTTA GTGCGCGGCA CTTTGAAGAA GGGGCATTTG TCGAGAAAGG GCAGCCTCTC
TATACGCTCG ATCAGGACAT CTATCGCAAC ACGGTGCATC AGGCAGAGGC GGCACTAGCC
GTGGCACAAG CCACCGAAAC CCTGGCGCAG CAGAAGTTTG ATCGCCAAGA GGAACTGACC
CGGCGGGACG TGCAATCTCG GGCGCTCCTT GAGGAAGCTC AGGCCAATCT TGCCGTCAGC
CAGGCGAATG TTGCCGCCGC CCAGTCTCAG GTAGAAGCAG CGAGGATCAA CCTCGCCTAT
ACGGAGATCA GCGCGCCTAT TTCGGGGCTC ATCGGGCGAT CTGCAGTTGC CACAGGAGAT
CTGATCAGCC CACAATCCGG CCCGATGGCG ACCCTCGTGC AGTTTGATCC GATCTACGCG
AGCTTTCCGG TGCCTCAGCG CAGCATGATC GATTTTCGCA AACGGGGCGC GCGTAACGAG
GACGTGTTTG TCTCGCTCAC CTTGGCAGAT GGCTCTGTTT ATCCGCATCA CGGCGTGATC
ACCTTCACCG ATGTGAGCGC GGCCTCTTCC AGCGATGCGG TCATCGTCCG CGCGACGGTT
CCAAATCCGG ACAACCTCCT GATCAACAAC GGCCTTGTGG ATGTGCATCT GGTGGCCAAC
GCCGACAGCC GCGCGCTTGC CCTGCCAGCG CAGGCACTCT TGCTGGATCA GCAGGGAGCA
TATGTGCTGG TGGTTGACGG TGACGACAGA GTGCAGGCCC AACGGGTCGA AGTGGGCACC
CAGCGGGCCG GGTACCTGGA GGTCAAAGAC GGGCTGGAGG CAGGTGCGCG GGTCATTGTT
GAGGGCATCC AGAAGGCACG TCCGGGCAAC AGGGTTACCG TCTCGCTTGT GAACACAGAC
AACTAG
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| Protein sequence | MASSIDRRTD QFCAWIRLNC LLICALTALP LSAAAQDQNA APPPPAVTVA IIEERNFQEA
ETFSGRIEAI QSVDLIARVQ GYLSARHFEE GAFVEKGQPL YTLDQDIYRN TVHQAEAALA
VAQATETLAQ QKFDRQEELT RRDVQSRALL EEAQANLAVS QANVAAAQSQ VEAARINLAY
TEISAPISGL IGRSAVATGD LISPQSGPMA TLVQFDPIYA SFPVPQRSMI DFRKRGARNE
DVFVSLTLAD GSVYPHHGVI TFTDVSAASS SDAVIVRATV PNPDNLLINN GLVDVHLVAN
ADSRALALPA QALLLDQQGA YVLVVDGDDR VQAQRVEVGT QRAGYLEVKD GLEAGARVIV
EGIQKARPGN RVTVSLVNTD N
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