| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3383 |
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| Symbol | |
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| ID | 4075282 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 398618 |
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| End bp | 400162 |
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| Gene Length | 1545 bp |
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| Protein Length | 514 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638004891 |
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| Product | BCCT transporter |
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| Protein accession | YP_611617 |
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| Protein GI | 99078359 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.198067 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGACA CATCTTTGGA AACACATCTC AAGAAGAGCC GGCTCAACAC GCCGCTTTTC
CTGATTTCGG GGGGCTTTAT CGCGCTCTTT TGTATCGCCG CATTGATCGA CCTTGAGGGG
TTGTCGGCGG CTGTGGATTG GGGCTTCAAC GTCTCGGCCA CCTATTTCGG CCTCTACTGG
CAGGTTCTCC TTCTGGCGAC CTTCCTGATC GGCCTCGTGC TCTGCGTTCT ACCAGGTGGC
AAGGCAATCA TGGGCAATCT GGCCGCGCCG GAATTCACCC TGTTTCAGTG GGGCTCCATG
ATCATGTGTA CCCTGCTTGC CGGCGGGGGT GTATTCTGGG CTGCGGGGGA GCCAATCGCA
CATTTCCTTT ATTCACCACC GCTCTATGGA GCTGAAGGTG GGACCGAGGC GGCCGTCAAT
CCCGCAATTG CGCAGAGCTT CATGCATTGG GGCTTTCTTG CTTGGGCCAT TCTTGGTTCG
CTCTCGACCG TGATGTTGAT GCATTATCAC TACGAAAAGG GCCTGCCGCT TGCTCCGCGC
ACGCTGCTCT ACCCGCTGTT TGGTGACAAG GCGATCAACG GGCCAATCGG TCTGATCGCA
GATGCGTCCT CGATCATTGC CGTTGTTGCT GGAACCGTGG GGCCAATCGG TTTTCTGGGC
CTTCAGGTCA GCTATGGCCT GTCTGACCTC TTTGGTCTCC CGGACGTCTT TGCCACGCAG
TTCATGGTGA TCGGTGGGCT TGTCGCGATC TATACGATCT CGGCGATGAC TGGTTTGTCG
CGCGGGATTC AGCTTCTGTC CAAGATCAAT GTGATCCTGG CGGCGGCGCT CTTGATTTTC
GTGCTGGTAG CTGGACCGAC GGGATTCATC TTTGGCTCCT TCTTCTCTGG CTTTGGCACA
TATCTTGGCA ACTTTTTCCA AATGGCCCTG TTCCGCGGTG ACGCAGGCGT CTTTGGCGAA
CCGGGCTGGC TGGGCTGGTG GACCGTGTTC TTTTGGGGAT GGTTCATGGG CTATGGCCCG
CTGATGGCGA TGTTCATTGC CCGTGTCTCG CGGGGCCGCT CGATCCGTTC GATCATCATC
ATGCTATCGA TCATCGCCCC GATCGTCACC AACTTCTGGT TTACCATCAT CGGTGGCACC
GGCATCTCGA TGGAGCTGGC CGCGCCGGGG ACCATTTCCA CCGCGTTCGA AGGGTTCAAC
CTGCCCGCAG CACTATTGGC GATCACCTCC AACCTGCCGA TGGGCTTTTT GATCTCGCTT
CTGTTCCTGA TCCTGACAAC GATCTTTGTG GCCACAACCG GCGACAGCAT GAGCTACGTG
ATCTCAGCCA CGATGAGCGA CGGGGAAAAT CCGCCCACAA TGGTGCGCAT TTTCTGGGGC
GTTGCGATGG GTATCATGGC TATCATCCTG ATCTCGGTCG GCTCCGGGGG CGTGTCCAAG
CTGCAGAGTT TCATAGTCGT GACCGCCGTG CCAGTCTCGC TGATTCTGCT TCCATCGCTC
TGGGACGCAT TGCGCATCAC AATTGCCAAA GGCCGCGAGC AATAA
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| Protein sequence | MSDTSLETHL KKSRLNTPLF LISGGFIALF CIAALIDLEG LSAAVDWGFN VSATYFGLYW
QVLLLATFLI GLVLCVLPGG KAIMGNLAAP EFTLFQWGSM IMCTLLAGGG VFWAAGEPIA
HFLYSPPLYG AEGGTEAAVN PAIAQSFMHW GFLAWAILGS LSTVMLMHYH YEKGLPLAPR
TLLYPLFGDK AINGPIGLIA DASSIIAVVA GTVGPIGFLG LQVSYGLSDL FGLPDVFATQ
FMVIGGLVAI YTISAMTGLS RGIQLLSKIN VILAAALLIF VLVAGPTGFI FGSFFSGFGT
YLGNFFQMAL FRGDAGVFGE PGWLGWWTVF FWGWFMGYGP LMAMFIARVS RGRSIRSIII
MLSIIAPIVT NFWFTIIGGT GISMELAAPG TISTAFEGFN LPAALLAITS NLPMGFLISL
LFLILTTIFV ATTGDSMSYV ISATMSDGEN PPTMVRIFWG VAMGIMAIIL ISVGSGGVSK
LQSFIVVTAV PVSLILLPSL WDALRITIAK GREQ
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