| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3375 |
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| Symbol | |
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| ID | 4075274 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 389009 |
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| End bp | 390259 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638004883 |
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| Product | sarcosine oxidase beta subunit family protein |
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| Protein accession | YP_611609 |
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| Protein GI | 99078351 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | [TIGR01373] sarcosine oxidase, beta subunit family, heterotetrameric form |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.480932 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTTACT CTGCTTTGAG ACTGATCAAG GAAAGCCTGA CCGGACACAG GGGCTGGGGG
CCTCAATGGC GCGACCCTGA CCCACAAGCG TCCTATGATT ACGTCATCAT CGGGGGCGGG
GGACACGGAT TGGCCACCGC TTACTATCTG GCCAAAGAGT TTCAGGGCCG CCGGATTGCG
GTTCTGGAAA AGGGCTGGAT TGGCGGTGGC AACGTCGGGC GCAACACGAC GATCATTCGC
TCCAACTACC TTCTGGACGG CAACGAGCCG TTCTACGAGT TCTCGCTGAA GCTTTGGGAA
GGGTTGGAGC AGGACCTGAA CTATAATGCC ATGGTAAGCC AGCGTGGCAT TCTCAACCTT
GTGCACACCG ATGCCCAGCG CGATGCCGCG CGGCGGCGCG GGAATGCGAT GATCCTGAAC
GGATCGGATG CGGAACTCCT CGACACTGAT GGCGTCCGCG CGCTCTATCC GTTCCTGAAT
TTCGAAAATG CCCGCTTCCC GATCAAGGGT GGCCTCCTGC ACCGGCGCGG TGGGACCGTG
CGGCATGACG CTGTTGCCTG GGGCTACGCC CGCGGCGCAG ATCAGCTGGG CGTGGACATC
ATCCAGAACT GCGAAGTCAC CGGCTTCAGG GTGGAAAACG GCCGCGTAAC AGGCGTTGAA
ACATCACGCG GACTGATTCG CGCTGCAAAA GTCGGCGTAT CCGTCGCGGG CAGCTCGAGC
CGCGTGATGG CGATGGCCGG AATGCGCTTG CCAATCGAAA GCCACGTGCT GCAGGCCTTT
GTGTCCGAGG GACTCAAACC CTTCATTCGG GGGGTCATCA CTTATGGCGC GGGACATTTC
TATTGCAGCC AATCCGACAA GGGCGGGCTG GTGTTTGGCG GCGATATAGA CGGCTACAAT
TCATATGCAC AACGCGGCAA CCTTCCGGTG GTCGAAGATG TCGTCGAAAG CGGCATGTCA
CTGATCCCCG GTCTGGGGCG CGCACGGCTG CTGCGCAGTT GGGGCGGCAT CATGGATATG
TCCATGGACG GCTCCCCCTT CATCGACAAG ACCCATATCG AAGGCCTCTA TTTCAACGGT
GGCTGGTGCT ATGGCGGCTT CAAGGCAACA CCCGCCGCAG GCTTTTGTTT TGCGCATCTC
CTGAAGACCG ACCGCCCACA TGAAACCGCC AAAGCCTATC GGCTCGACCG GTTCATGACG
GGGCACATGA TCGACGAAAA GGGCCAAGGC GCCCAGCCCA ACCTTCACTA A
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| Protein sequence | MRYSALRLIK ESLTGHRGWG PQWRDPDPQA SYDYVIIGGG GHGLATAYYL AKEFQGRRIA
VLEKGWIGGG NVGRNTTIIR SNYLLDGNEP FYEFSLKLWE GLEQDLNYNA MVSQRGILNL
VHTDAQRDAA RRRGNAMILN GSDAELLDTD GVRALYPFLN FENARFPIKG GLLHRRGGTV
RHDAVAWGYA RGADQLGVDI IQNCEVTGFR VENGRVTGVE TSRGLIRAAK VGVSVAGSSS
RVMAMAGMRL PIESHVLQAF VSEGLKPFIR GVITYGAGHF YCSQSDKGGL VFGGDIDGYN
SYAQRGNLPV VEDVVESGMS LIPGLGRARL LRSWGGIMDM SMDGSPFIDK THIEGLYFNG
GWCYGGFKAT PAAGFCFAHL LKTDRPHETA KAYRLDRFMT GHMIDEKGQG AQPNLH
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