| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3340 |
|---|
| Symbol | |
|---|
| ID | 4075239 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | + |
|---|
| Start bp | 351039 |
|---|
| End bp | 351881 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 638004848 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_611574 |
|---|
| Protein GI | 99078316 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3777] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.018033 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.650212 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCGTC TGGCAGATTG GATCGGCCGA ACAGAAACCC GCACCGAGTG GATTGCGCCT
TTTCCTGCCA ACGCACTGGC GGCAACGCTT GATTGCTCCG GCACGGAATA TGGAGAGGAC
TCCGAACTGC CTCCGCTCTG GCATTGGATG CATTTTCTGC CAATCTACAA GCTATCAGAA
GCCGGGTATG ACGGGCATGC TGCCCTGGGT GGGTTTCTTC CGCCAGTGCC TTTGCCACGC
CGGATGTGGG CGGGCAGCAG ATTGCAGTTC CATGCCCCAC TGCGGATCGG GCATGTGCTC
ACCAAGAAAT CGACGGTTCA ATCGGTGATT GCCAAGAAAG GCCGCAGTGG CCCCTTGGTC
TTTATCACGG TCAGGCACCT GATATTTGAT CAGGACACCC TTGGCATTGA TGAAGAACAC
GACATCGTTT ACCGCCAAGA ACCCTCGCCC GACGCACCGG TGCAAAAACC ATTGCCCGCG
CCAGAAACCT CTGACTTTTC ACGCGAAATC ACTCCTGATC CAGTTCTCCT GTTTCGCTAT
TCAGCGCTGA CATTCAACGG GCACCGGATC CACTACGACC GGCCCTTTTG CACCGTCTCC
GAAGGATATA GTGGCCTCGT CGTGCACGGC CCGTTGCTTG CTACGCTCCT TCTGGATCTA
TTGCGCCGAG AACGTCCCAG TGCAACGGTC ACGGGGTTTG AATTTCGTGC GCTCTCTCCG
GTTTTTGACA ATGATCCGTT TTCGGTACAC GGCGCCATTG GCGAGGATGC GAAGACCTAC
AGCCTCTGGG TGCGGCGCGC GGATGGCGCG TTGGCAATTA AAGCCGAGGC GCGCGTGATA
TGA
|
|---|
| Protein sequence | MDRLADWIGR TETRTEWIAP FPANALAATL DCSGTEYGED SELPPLWHWM HFLPIYKLSE
AGYDGHAALG GFLPPVPLPR RMWAGSRLQF HAPLRIGHVL TKKSTVQSVI AKKGRSGPLV
FITVRHLIFD QDTLGIDEEH DIVYRQEPSP DAPVQKPLPA PETSDFSREI TPDPVLLFRY
SALTFNGHRI HYDRPFCTVS EGYSGLVVHG PLLATLLLDL LRRERPSATV TGFEFRALSP
VFDNDPFSVH GAIGEDAKTY SLWVRRADGA LAIKAEARVI
|
|---|
| |