| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3339 |
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| Symbol | |
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| ID | 4075238 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 350035 |
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| End bp | 350931 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638004847 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_611573 |
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| Protein GI | 99078315 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.173943 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.644256 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATCG AACTTGCGGA CCTGAGGCTT TTTGTGATGA TCGCCGAGTG CGGCAACCTG
ACCCACGGTG CTGCGCGTGC CTTCCTGTCG CCGCCCGCTG CCAGCGCCCG CATCAAAGCC
ATGGAGCAAG AGATTGGCCA GCAACTCCTT GTGCGCAAGA ACAAAGGGGT AGAGCTGACA
CCGTCGGGTG ACGCCTTGTT GCGGCATGCA CGCCTTGTCC TACGACAGTT TGATTTCCTC
ACGGATGACA TGACGAATGC TCAGATGGGA CACTTGCGTA TCTATGCCAA CACGACAGGA
GTGACGGAAT TCCTGCCCGC GATCCTCGCG CGTTTTTTGG CGGACCATCC GGGCGTTCGG
GTCGATCTCC AGGAGCGACT GACCCAAGAG ATCATCCGTG CTGTGGCCGA TGGGACTGCG
GATATCGGGA TCATTTCTGG CACCGAAGGG CGTGATGGTT TGGAGCGACT GCGTTTTGCG
ACGGACCGGC TGATGCTGGC GGTTCCTTCC GGGCATCATT TGGCCCATCA TGATCAGGTT
TCCCTGGAGC AAACCCTGGC ATTTGAGCAT ATCGCGCTTC ACGATGGCAG CACTTTGCTC
GATTTCCTGC GTCGGCAGTT GCGTCGTTCA GCGTTTGATC GCCAACTCAG AATTCAGGTG
CGCAGTTTTG AAGCCATGTG TCGCCTGATC GAGGCAGGCG TTGGGATCGG GGTCGTGCCG
GAGTCTGCCG CGCTGCGCCA CCTGCAGACC ATGGACATCA CGTTGCTGGC TTTGGCGGAC
GACTGGGCCG TAAGAGATCG CTCTATCCTA GTGCGTCGCT GGGCCGATCT GCCCCAATCC
GCGCAAAGGC TCATTGATCT GCTGGTAGAG AAAGAAGCAG GCGGTGCCGA AGTCTGA
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| Protein sequence | MNIELADLRL FVMIAECGNL THGAARAFLS PPAASARIKA MEQEIGQQLL VRKNKGVELT
PSGDALLRHA RLVLRQFDFL TDDMTNAQMG HLRIYANTTG VTEFLPAILA RFLADHPGVR
VDLQERLTQE IIRAVADGTA DIGIISGTEG RDGLERLRFA TDRLMLAVPS GHHLAHHDQV
SLEQTLAFEH IALHDGSTLL DFLRRQLRRS AFDRQLRIQV RSFEAMCRLI EAGVGIGVVP
ESAALRHLQT MDITLLALAD DWAVRDRSIL VRRWADLPQS AQRLIDLLVE KEAGGAEV
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