| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3293 |
|---|
| Symbol | |
|---|
| ID | 4075697 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | - |
|---|
| Start bp | 297512 |
|---|
| End bp | 298483 |
|---|
| Gene Length | 972 bp |
|---|
| Protein Length | 323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638004802 |
|---|
| Product | transcriptional regulator |
|---|
| Protein accession | YP_611529 |
|---|
| Protein GI | 99078271 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCCAA AATCGCCGCC TATTTTTGAA TTTCTGCTGT TTGAGGGGTT CTCCAACATG
GTGCTGGCGA GCGCCATGGA ACCCCTGCGC GATGTGCGGA TGAACTCAGG CCAAGAGGTT
TCCGGTTGGC GCGTCACCAC GCTGGACGGC GCGCCGGTCC GCAGCTCCAG CGGATTGCAG
ATCACCCCCG ATGGAAGCTT TGACGAGGGT GAGACCAACC GCACTCTGGT GCTGGTTGCG
GGGTACCATG TGCGGGATCA GGTGACGCCG ACGCTCTTGG CCAAACTCAG GACCGCCACC
CGTCAGGCCG AGCGGGTGCT GGCGCTGGAC ACGGCCGCCT GGCTGCTGGC GGCGGCGGGC
GTTTTGGAGG GCCAGGCCGC GACGATCCAC TGGCAAGAGT TGGAGGCGTT CAGCGAGACC
TTCCCCAAGA CCGAAGTATC CACCGCCCGG TTTGTACGCT CTGGTGCGTT CCTCACCTGT
GGTGGCGCCA GCACGGCGCT CGACATGATG CTTAGCCTCA TTCAGGAGCT TTATGGCTCC
GCCGCGGCCT TTGGGGCATC GACGATGTTT GTCTATGATC CCTCGCGCCA GTCGGAGCTG
AACCGGGGCG CTGCGCGGTT GGAGCAGAGA GGCTCACCAA AGGTGCTCGA GGCGGTGAAC
CTGATGGCAG AGCGCATTGA GTCACCGCTC AGTACGGCTG AATTGGCCAA GCAAGTCTCG
CTCTCTGAGC GCACGCTTGC ACGCGCGTTT CAGCGTGAAT TGGGTATGAC GCCCGGTAAG
TATTACAAAA TACTGCGGCT GCAGCATGCA CGCTATCTCT CGGAGGAAAC ACATCTGAGC
CTTGAGCAAA TTGCCCATCG TTGCGGGTTC TCTTCCGCTT CGTCGCTTGG CCGCTCCTTT
GTAGGTCTCT ACGGGCGCAC CCTTCGCGAC ACGCGTACTC AGGAAAGGCC CTGGGTGAAG
TCCGCAAGAT AA
|
|---|
| Protein sequence | MPPKSPPIFE FLLFEGFSNM VLASAMEPLR DVRMNSGQEV SGWRVTTLDG APVRSSSGLQ
ITPDGSFDEG ETNRTLVLVA GYHVRDQVTP TLLAKLRTAT RQAERVLALD TAAWLLAAAG
VLEGQAATIH WQELEAFSET FPKTEVSTAR FVRSGAFLTC GGASTALDMM LSLIQELYGS
AAAFGASTMF VYDPSRQSEL NRGAARLEQR GSPKVLEAVN LMAERIESPL STAELAKQVS
LSERTLARAF QRELGMTPGK YYKILRLQHA RYLSEETHLS LEQIAHRCGF SSASSLGRSF
VGLYGRTLRD TRTQERPWVK SAR
|
|---|
| |