| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3244 |
|---|
| Symbol | |
|---|
| ID | 4075386 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | + |
|---|
| Start bp | 247293 |
|---|
| End bp | 247832 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 638004753 |
|---|
| Product | CheD, stimulates methylation of MCP proteins |
|---|
| Protein accession | YP_611480 |
|---|
| Protein GI | 99078222 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1871] Chemotaxis protein; stimulates methylation of MCP proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.68588 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAAGG TTGAAGTCTC TGAATTGCAC GTTCGCATCG GTCAGGTCAA AATCGGCAGC
CCCGGGCAAG TCCTGACGGC CATCCTTGGA TCCTGCGTGG GGATTGGTTT TTTCTTTCCG
CAGCGGCAGA TATACGGGCT GGCCCATTGT CTTTTATCCC AGTCTTCATC GCAACCTGTT
GCCAGTTCCG CTGCGCAAAC CGGCCGTACG CGAGAAGACG GGCAACTTGT CGGGAATGGT
CGCCATGTGG ACAAGGCCAT CGAGAGCCTA TTGAAAATGA TGGATATCCA GGATGAAGAG
CGGCGCCAAC TTCGGGTTGT TCTGGCGGGC GGTGCGAACA TGTCGATGCC ATTCGACACC
CCCCCCTCTC AACTGGTTGG AAGCGTAAAC GCAAAGTTTG CACGCCAAGC CATTCGCAGT
GCTGGGCTGC GTCTGCTTGG CGACGATCTT GGTGGGCTGA ACGGACGTCG TATCTCGATC
AACTGTGACA GCGGAGAGTA CGACATTCAA CAAATTCCCC GTCTTGGAGG AACAGTGTAA
|
|---|
| Protein sequence | MDKVEVSELH VRIGQVKIGS PGQVLTAILG SCVGIGFFFP QRQIYGLAHC LLSQSSSQPV
ASSAAQTGRT REDGQLVGNG RHVDKAIESL LKMMDIQDEE RRQLRVVLAG GANMSMPFDT
PPSQLVGSVN AKFARQAIRS AGLRLLGDDL GGLNGRRISI NCDSGEYDIQ QIPRLGGTV
|
|---|
| |