| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3231 |
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| Symbol | |
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| ID | 4075373 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 230751 |
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| End bp | 233225 |
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| Gene Length | 2475 bp |
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| Protein Length | 824 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638004740 |
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| Product | periplasmic sensor hybrid histidine kinase |
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| Protein accession | YP_611467 |
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| Protein GI | 99078209 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.399337 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCTGGT TTCGCGACCT TGGTGTGCGG GTCCGCCTGT CTGCTGCGCT GGCGGTGATG
TTTGGGCTGA TGGTCTTGGT GAGCGGAATC GGGTTGCGGG TGCTTGATCG CACCGAGGTC
TGGATGAACG TGCTGCACCG GGACACGCTG ACCGAAGTCG AAGCGGCGAT GGACCTTTCG
CGCGATGTGT CCGAGCTTGC GACCTCTGCA CCGTTCCTCT TTGCGCTTTT TGCGCCGTAT
CAGCTCGAAC AAGAGGTTGC AGCCGTGATG GAGAACCTCG AACGGGTGCG TCAATCCTCG
GGGAACGATC CAGAACTGGA TCTGCCGCTG GCACGGTTGG GTCTAGCTAT CGAAGATCTG
GCGCAAGCAC TTTTACCACA AAGTGCCCGA CAGGCAGAGC TCAAGGCAAT CGACCGGGCG
CTGGTGCGGC TGAATGCCCG CAGCAGGCGG ATGTCACAGG ATGATTTGTT GCCGTTGGAG
GCCCAGCAGG ATTGGGGCGG TCTCCAACAG TTGACATCTG TGGCGTTGGG CGCCGCGCGG
GCAGAGGAAT TGATCGAACT GGGCGGATTT GCGCGCGATT TTCAACGCCT GAGCGGGCAG
CTTCAATCCT TGTCACGACA GGCGCCGCGC GAGACCTATG ACGAGATTCG AAACGTCGTG
CAGCGGGGGG GCGGGCTGTT TGTCCTCAAG CATGGGAACC TCTCGGCGCG CCTAGACGCC
GAGAATGCGC TGTTTCGTAT TCGCCAGGAA ACGCGGCGTG TCAGCGCCTT TGCCGAGACC
AAGGTGGCCC AGGCCGAGGA CCGCTTGTCT CGCGCGCGCG CCGAGACATC AGATACGCTG
GCCTATGCGC GCAATGCCTT TCTCGCACTG AGTATCGCGA GTTTGATCGT CGCTGTGACC
TCCTCGGTCT ATGTGTCGCG CCACGTTGCA CGCAATCTCG AACGCATTTC GGGTGCGATG
CGGCGGCTGG CGTCGGGAAA CCTGCGGGTG GACCTGCCCG CGCCACCCAC CGCGCGCGAT
GAGATCGGCC AGCTGTTTAC GGCCTTCGGC GTGTTTCGCG ACAACGCTCG CAAATTGGAC
CGGCGCACAG CGCAGATGCG GCATCAGAAT GCGCTCTTTT CGCGGGTCTT TCAAAACATC
AAGGACGGCG TTGCAGTCGA AGCGGCGGAC GGGCGCATCA TCGCCGAGAA CGACAACCTG
CGCCGTTTGC TGCGTCTACC GCCTGATCCA GATGGAACCA GCGATCACAT GAGCGCGCTA
ATTGCGGTCT CGCCCTTTTG CCGCAATGCC GGCGGAGACG AGCGCGGCGG TTTTGACGAA
TATAACGACC CTGATGGCAA CGTGATCGAG ATCCACCTCT CGCCACTGCC GGATGGGGGT
CAAGTTTGGC TGATCTCAGA GACAACGGAG CGCAAGCGCA TGGAGGCCCG ATTGGAGGCC
ATCCGCAGGG TCGAGGCCTT GGGCAAGGTC TCTGGCGAGG TGGCCCATGA TTTCGGGAAT
ATCCTGTCGA GCATCTCGGG AAATCTCCAC CTCCTGGAGC ATGCAGAACC GGAGCAACGA
CGCGATCTGC ATGAACGGCT TGGGGCAGCG CTTGACCTTG GGGCGAGCCT CACCGAGCGC
CTTTTGGCCT TTGCCCGCAA GCAACATCTT GCACCACAGG TGACGAATGT GTCCGAACTG
GTGTCGGGGA TGGCCGATCT CCTCGAAATC GCCATTCCCA AACATGTCTC TTTGCAAGTC
GAGGTCTCAA AGGCCCCGGC GACCTGTCTC GTTGACCCTG GTCAGCTTGA AAGTGCGATC
CTCAATTTGT GCATCAATGC CGGGCAGGCC ATTTCAGCGA CAGGTTCGGA TACTGGGCGG
ATTGTCGTGT CAGTGACCGC TGGTGAGAGA GTCGAGGTCG CCGTCAGCGA CGATGGCTGC
GGCATGTCCG AAGAGGTGCT GCGCCACGCG ACCGATCCGT TTTTTACACG CAAACCCGAC
GGCGGTGGCA CCGGACTGGG GTTGTCCATG GTGGATGGGT TCGCACATCA GTCCGGCGGT
CGGCTCGACA TTCAAACGAG CACGCAGGGC CCAATGCGGG GAACGATAGT TACCCTGTCT
TTCCCGCATC AGGTGTACAA CAGCGAAGAA AACTCTTCTG GTGGTCCGTG GATGGCTTTG
GTCATCGATG ATGATCCGGT ATCGCTAGAG CGATCCTGCC GTCTCCTGCA GGAACTGGGC
GCGCAAACTT TGCGCTGCGC CACATATGCA GAGGCGGTCA AAGCCTTAGA GGGGCTTGAC
CATCTTGACG CGATCTTGAC CGATCTCTGG CTTGATGATG GGTTTAGCGG TCGGGATCTG
ATTAGACGGG CTCAAGAGTG TTTTCCCGAA TGCCGTTGCG CGCTTATGTC CACGCGCGGT
GCCCCGACGG ATTTGCCCCG AGATGTTGTT TTTGTCGAAA AACCCGTCAG CAAAGAGACA
TTGCGCGAAA TCTGA
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| Protein sequence | MSWFRDLGVR VRLSAALAVM FGLMVLVSGI GLRVLDRTEV WMNVLHRDTL TEVEAAMDLS
RDVSELATSA PFLFALFAPY QLEQEVAAVM ENLERVRQSS GNDPELDLPL ARLGLAIEDL
AQALLPQSAR QAELKAIDRA LVRLNARSRR MSQDDLLPLE AQQDWGGLQQ LTSVALGAAR
AEELIELGGF ARDFQRLSGQ LQSLSRQAPR ETYDEIRNVV QRGGGLFVLK HGNLSARLDA
ENALFRIRQE TRRVSAFAET KVAQAEDRLS RARAETSDTL AYARNAFLAL SIASLIVAVT
SSVYVSRHVA RNLERISGAM RRLASGNLRV DLPAPPTARD EIGQLFTAFG VFRDNARKLD
RRTAQMRHQN ALFSRVFQNI KDGVAVEAAD GRIIAENDNL RRLLRLPPDP DGTSDHMSAL
IAVSPFCRNA GGDERGGFDE YNDPDGNVIE IHLSPLPDGG QVWLISETTE RKRMEARLEA
IRRVEALGKV SGEVAHDFGN ILSSISGNLH LLEHAEPEQR RDLHERLGAA LDLGASLTER
LLAFARKQHL APQVTNVSEL VSGMADLLEI AIPKHVSLQV EVSKAPATCL VDPGQLESAI
LNLCINAGQA ISATGSDTGR IVVSVTAGER VEVAVSDDGC GMSEEVLRHA TDPFFTRKPD
GGGTGLGLSM VDGFAHQSGG RLDIQTSTQG PMRGTIVTLS FPHQVYNSEE NSSGGPWMAL
VIDDDPVSLE RSCRLLQELG AQTLRCATYA EAVKALEGLD HLDAILTDLW LDDGFSGRDL
IRRAQECFPE CRCALMSTRG APTDLPRDVV FVEKPVSKET LREI
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