| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3193 |
|---|
| Symbol | |
|---|
| ID | 4075297 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | + |
|---|
| Start bp | 186865 |
|---|
| End bp | 187434 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 638004702 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_611429 |
|---|
| Protein GI | 99078171 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.258908 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGTCTCG TAACCACAGT TGCGGCCCTG CTCTTGGCCG TCCCGGCGAT CGCTTCAGAT
GAGTTCACCC CGGCCCTTGA GGCCTACATG AACGATGAAA TCATGAACTG GGCCAATGCC
CCAGAGATCG TCGCGGCGAT CAAGGCGCAA AATGATGCAC ACGCCGGCCT TACCCAGACT
CAGATCGAGG AAATGGACCA GGCCTGGCGT GGTACGGTCG CTACGCCTCA GAATGACCCC
ATCGCACCAG TGCTCGAAAA TCCGGTCGCA GACGCATTGC GCGCCCGTAT CGATGCCTCC
ATGGGCGCCA TGACGGAAAT TTTCATCATG GATGAACACG GACTGAACGT AGCTGCCTCC
GATGTCACCT CGGACATGTG GCAAGGGGAC GAAGCAAAAT TCCAGGACAC CTATGGTAAG
GGCGCAGGCA GCGTTCACAT CAGCGGGGTC GAGCTCGATG AGTCCACACA GCGCTATCAG
GGCCAAATCT CGGTCACGAT TGTTGATCCG GAAACCGGAT CTCCGATTGG CGCGATTACC
GTGGGCGTTG ACGCGGAAAG CCTTCTCTAA
|
|---|
| Protein sequence | MRLVTTVAAL LLAVPAIASD EFTPALEAYM NDEIMNWANA PEIVAAIKAQ NDAHAGLTQT
QIEEMDQAWR GTVATPQNDP IAPVLENPVA DALRARIDAS MGAMTEIFIM DEHGLNVAAS
DVTSDMWQGD EAKFQDTYGK GAGSVHISGV ELDESTQRYQ GQISVTIVDP ETGSPIGAIT
VGVDAESLL
|
|---|
| |