| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3188 |
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| Symbol | |
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| ID | 4075292 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 179563 |
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| End bp | 180438 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638004697 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_611424 |
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| Protein GI | 99078166 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.708036 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGTTAA ACTGGGATGA TATGCGCACG GTTCTCGCTC TGGTGCGCTG TGGCACACTC
GCTGCTGCAG GGGACGCTCT GGGTGTGACC TACACCACCG TTGCCCGTAG GGTGACACGC
GCCGAGAAGG CATTGGGCCA ACCCTTGTTT GAACGCCACC CCGAAGGCTA TGTGCCGATG
CCGCTCGCGC GCGATTTGGC CGTGGCTGCG GAGAGTATGG AGAGGGAAGA ACACCAGTTG
CTGCGGCGCG TCACTGGAAA GGACCAGACC CTCTCGGGGC GTCTCACCCT GACTGCACCG
CAACTCCTGA TACAGGCACA GCTTGCCCCG GTCTTGAAGC GCTTCATTGA CCTCTACCCC
GAGGTCGAAC TTGTGGTGAA GGCCAGCAAT GATCTCTTGG ATCTGAACAG ACGAGAGGCA
GATTTGGCGA TCCGGATCAG CTCGGAACCG GGGGAGACTT TGATCGGGCG TCAGTTGACG
GCCCAAAAGA GCGCCTGTTT TGCGGCGCCC GAGGTGGCAG AGGCGGCAGC TCGGTCACCG
GAGGCGCCCT TGGATTGGGT GCTCTATACA CATCACAAGG CACCTCCCAA GGTCGCATGG
GCTATTCATC CCAACTCCCG TGTGCGTGCG CGATTTGATG ACATGGTGGC GCTGAAGGCC
GCCGCCGAAG CAGGGATGGG CGCGCTGCGT ATGCCAGTCT TTCTGGGGCG CACCTCCCCT
GCTCTGGTCC CACTTCGACA TCTTGCAACA ATGACCTACG CGCCGATCTG GATGCTCACG
CACAAGGATT TGCGTCAGTC GCGCAAGGTC GCCGCCCTCA AAGAGCTTCT GGTTCCCTGG
TTCCGAAAGA ATGCGGCGAT CTTTACCGAA CTCTGA
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| Protein sequence | MQLNWDDMRT VLALVRCGTL AAAGDALGVT YTTVARRVTR AEKALGQPLF ERHPEGYVPM
PLARDLAVAA ESMEREEHQL LRRVTGKDQT LSGRLTLTAP QLLIQAQLAP VLKRFIDLYP
EVELVVKASN DLLDLNRREA DLAIRISSEP GETLIGRQLT AQKSACFAAP EVAEAAARSP
EAPLDWVLYT HHKAPPKVAW AIHPNSRVRA RFDDMVALKA AAEAGMGALR MPVFLGRTSP
ALVPLRHLAT MTYAPIWMLT HKDLRQSRKV AALKELLVPW FRKNAAIFTE L
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