| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3162 |
|---|
| Symbol | |
|---|
| ID | 4075332 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | - |
|---|
| Start bp | 143129 |
|---|
| End bp | 143734 |
|---|
| Gene Length | 606 bp |
|---|
| Protein Length | 201 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638004665 |
|---|
| Product | lysine exporter protein LysE/YggA |
|---|
| Protein accession | YP_611398 |
|---|
| Protein GI | 99078140 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1280] Putative threonine efflux protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGACCT ATGATCTCCT CGCAGCGCTT GCGCTTTTTG CCTTCGTCTC CTCGATCACA
CCGGGGCCGA ACAACCTGAT GCTGATGGCC TCTGGCGCCA ATTTTGGCTT TCGGCGCACC
ATTCCCCATA TGCTGGGCGT GGCGCTTGGC TTTGTGTTCA TGGTGCTGCT GGTCGGCGCG
GGGCTGGTGC AGGTCTTTGA TGCCTACCCG GTGAGCTACA CCGTGCTCAA AGTTGGCTCG
GTGGTCTATC TTCTTTATCT GGCGTGGAAA ATCGCCAATG CGGGCGCTGC CAAAACCGGC
GCAGACGGGG ATGCCGGTAC CCCGATGACC TTTCTGCAGG CGGCGGCCTT TCAATGGGTG
AATCCCAAGG CCTGGGCGAT GGCGCTCACT GCGATCAGCG CCTATACGCC GGATCATACG
CTCTGGGCAA TTTTGGTTGT GGGGGTGGTC TTTGGGGCGA TCAACCTGCC GTCCGTGGGG
TCCTGGACCG TGCTTGGGCA GCAGATGGCG CGGTTCTTGA CCAGCCCCAA ACGACTGACG
CTCTTTAACT GGACCATGGC AGTGCTGCTG GTGGCCTCGC TCTATCCGGT GATCTGGCCC
AATTGA
|
|---|
| Protein sequence | MMTYDLLAAL ALFAFVSSIT PGPNNLMLMA SGANFGFRRT IPHMLGVALG FVFMVLLVGA
GLVQVFDAYP VSYTVLKVGS VVYLLYLAWK IANAGAAKTG ADGDAGTPMT FLQAAAFQWV
NPKAWAMALT AISAYTPDHT LWAILVVGVV FGAINLPSVG SWTVLGQQMA RFLTSPKRLT
LFNWTMAVLL VASLYPVIWP N
|
|---|
| |