| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3158 |
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| Symbol | |
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| ID | 4075328 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 139146 |
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| End bp | 139754 |
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| Gene Length | 609 bp |
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| Protein Length | 202 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638004661 |
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| Product | TetR family transcriptional regulator |
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| Protein accession | YP_611394 |
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| Protein GI | 99078136 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3226] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03384] transcriptional repressor BetI |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.303852 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAAGA GGCACCAGAC GCAGGAGACA GCCATGCCCA AACTTGGAAT GGAGCCAAAG
CGCCGCGCCG CCTTGGTCTC TGCGGTGATC GACGAGATCG GTGAGACCCG CTCGATCGAT
GTGACCGTGG CCAAGATCGC CCGCCGCGCG GGCATGAGCA GCGGCCTTGC GCATCACTAC
TTTGGCAGCA AGGAGCAGAT GCTCATTGCC GCCATGCGCT TCATTCTGGC GGAGTTTTCC
GCCGATGTGC GCGCCGAGCT TGCCAAGGCC AAAGACCCCC GCGGCCGGCT CGAGGCGATC
ATCCGCGCCA ATTTTGCCGC CCATGTGTTT GATCCGCGCA AGATGTCGGC CTGGCTCAGT
TTCTATGCGC TGGCGCAATC CAACCCGCAG GCCGCACATT TGATGAAACT TTATCAAAGA
CGGCTGCACA GCAATCTGAT GTATGACTTG CGCGCCCTGA CGCCCGATGC CTCTGCGGTT
GCGACCAAGC TTGCCGCCCT GATCGACGGC GTCTATCTGC GTGCCGCGCT CAATGTGACG
GGGGATCGAA AAGAGGCCGC ACAACAGGTC TCTGAGGCGC TCGAGAGCTT TCTGAACGCC
AAAGATTGA
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| Protein sequence | MSKRHQTQET AMPKLGMEPK RRAALVSAVI DEIGETRSID VTVAKIARRA GMSSGLAHHY
FGSKEQMLIA AMRFILAEFS ADVRAELAKA KDPRGRLEAI IRANFAAHVF DPRKMSAWLS
FYALAQSNPQ AAHLMKLYQR RLHSNLMYDL RALTPDASAV ATKLAALIDG VYLRAALNVT
GDRKEAAQQV SEALESFLNA KD
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