| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3141 |
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| Symbol | |
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| ID | 4075013 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 119699 |
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| End bp | 120640 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638004644 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_611377 |
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| Protein GI | 99078119 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0359838 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGAGA CATCTACCCC CGCCCAGAAA TCGCGCCTGC GCACTGCGCT TGAAAGCGAT
CTCTTTTATA CGTTCAAGCG CTCGCCCGTG GCCGTTGTGT CGACCATCGT GGTTCTGGTT
CTGGTCCTCT CGGCGGTGTT TGCGCCGCTG ATCGCGCCCA CGAACCCGTT TGATCCGGCC
TCGCTCAACC TGATGAACGG CTTTACCGCG CCGATGTCGC CCAATGATTT CACCGGCGAA
GTGTTCCTGA TGGGCACCGA CGATCAGGGT CGCGATGTAT TCTCGACCAT TCTCTATGGC
ATGCGGATTT CACTCTTTGT GGGTGTGGCT GCGGTGCTCT TTGCCATGGT TCTGGGGATC
ACGCTGGGTC TGTTGTCCGG CTACCTCGGG GGTTGGGTCG AGACGGTGAT CATGCGCATT
GCCGATGTGC AGCTGACGTT CCCGTCGATC CTCGTGGCGA TGCTGATCTT TGGTGTCGCC
AAGGGCATCA CCCCGGTGGA ATACCGCGAT CAGATGGCGA TCTGGGTGCT GATCCTTGCG
ATTGGCCTGT CGGATTGGGT GCAGTTTGCC CGTGTGGTGC GTGGCGCGAC CCTTGTTGAG
AAAAACAAGG AATACGTCGA GGCCGCGCGG CTGATCGGTC GGCGCTCCGG CGCGATCATG
CTGAGGCACA TCCTGCCGAA CGTGTTGTCG CCGGTCTTGG TCATCGCGAC GATCTCGCTG
GCGCTGGCGA TCATTGCCGA AGCGACACTG TCGTTCCTCG GGGTGGGCGC GCCGCCGACC
CAGCCGTCTC TTGGTACACT CATTCGCATC GGGCAGGGCT TCCTGTTCTC TGGCGAATGG
TGGATTCTTC TCTTCCCTGC GATCACGCTG TTGGGACTGG CGCTCAGCGT CAACCTGCTG
GGCGACTGGC TGCGTGACGC TCTGAACCCG AGGCTTCGCT AA
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| Protein sequence | MSETSTPAQK SRLRTALESD LFYTFKRSPV AVVSTIVVLV LVLSAVFAPL IAPTNPFDPA
SLNLMNGFTA PMSPNDFTGE VFLMGTDDQG RDVFSTILYG MRISLFVGVA AVLFAMVLGI
TLGLLSGYLG GWVETVIMRI ADVQLTFPSI LVAMLIFGVA KGITPVEYRD QMAIWVLILA
IGLSDWVQFA RVVRGATLVE KNKEYVEAAR LIGRRSGAIM LRHILPNVLS PVLVIATISL
ALAIIAEATL SFLGVGAPPT QPSLGTLIRI GQGFLFSGEW WILLFPAITL LGLALSVNLL
GDWLRDALNP RLR
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