| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3076 |
|---|
| Symbol | |
|---|
| ID | 4075170 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | - |
|---|
| Start bp | 44581 |
|---|
| End bp | 45951 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638004577 |
|---|
| Product | glutamate--cysteine ligase |
|---|
| Protein accession | YP_611312 |
|---|
| Protein GI | 99078054 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG3572] Gamma-glutamylcysteine synthetase |
|---|
| TIGRFAM ID | [TIGR01436] glutamate--cysteine ligase, plant type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.889782 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCATTC CTCAGTCCGG TGGCGGACCA ATCGAAAGCC ATGCTCAACT GGCGGCCTAC
ATGGAAGCGG GCTGCAAGCC GCGCGACGAT TGGCGCATTG GCACCGAGCA TGAGAAGTTC
GGCTACTGCA AGGACACGCT GAAACCGCTC CCCTACGAGG GGACGCGCTC CATTCTGGCT
GTTCTGGAAG GGTTGCGGGA CCGTCATGGC TGGGAGCCGG TGACCGAGGG CGGCAAGCTG
ATCGGCCTCA CCAAGGACAT GGCCAATGTG AGCCTTGAGC CGGGGGGAGC GCTGGAGCTG
TCAGGTGCCC CGCTCGAGAC CATCCATGAG ACCTGCGATG AGGTGAACAC CCACCTGCGC
GAAGTCAAAG ACATTGCTGA CGAGATCGGT GTTGGATTCA TCGGTCTTGG GGCCGCCCCG
ATCTGGCAGC ACGACGAAAT GCCGCTGATG CCAAAGGGCC GCTATCAGTT GATGAACGAC
TACATGGAGC GCGTCGGCAC CATGGGGCGC GCGATGATGC GGCGCACGTG CACGGTGCAG
GTGAACCTCG ATTTCGCCTC CGAGGCGGAT ATGGTGCAAA AGCTGCGCGT GGCGCTGGCG
CTGCAACCGG TGGCGACGGC GCTCTTTGCC AATTCCCCCT TCTTTGAAGG CAAGCCTAAC
GGGCTCAAAT CCTGGCGCAG CCACATCTGG CGGCATCTGG ATGATGCCCG TACCGGAATG
CTGCCCTTTG TTTTTGAAGA GGGCATGGGC TTTGAACGCT ATGCGGACTA TGCCCTTGAT
GTGCCGATGT ATTTTGTTTA CCGTGATGGC AAATATATCA ATGCTTTGGG CCAGTCTTTC
CGGGATTTCC TCAAGGGCGA GCTACCCGCA TTGCCGGGCG AGACGCCCAC ATTGAGCGAC
TGGGCCGATC ACCTGACGAC CGCATTCCCA GAAGCCCGCA TCAAGAAATA CATGGAAATG
CGCGGCGCCG ATGGTGGCCC CTGGCGTCGC CTCTGTGCTT TGCCCGCGTT CTGGGTGGGT
CTGATGTATA ATCAGTCTGC GCTGGACGCG GCCTGGGATC TGGTCAAGGG CTGGGACGCG
GAGACTCGCG AAAACCTGCG CATCGAGGCT GCGGTCAAAG GGCTGCAGGC AGAGGTCGGC
GCGATCAAGA TGCATGATCT GGCACGAGAG GTTCTGGCGA TTTCAGAAGC CGGACTGAAG
GCGCGCGCCC GTCAGGGTGC AGGCGGTCTT GTCCCCAACG AGACTCATTT CCTCAATGCA
CTGCGCGAGA GCGTCGAGAG CGGCAAAGTC CCCGCAGACG AACTCTTGGA TCGCTACAAT
GGCGATTGGA ACGGTGATCT GACCCGGATC TATGCCGATT ACAGCTATTG A
|
|---|
| Protein sequence | MSIPQSGGGP IESHAQLAAY MEAGCKPRDD WRIGTEHEKF GYCKDTLKPL PYEGTRSILA
VLEGLRDRHG WEPVTEGGKL IGLTKDMANV SLEPGGALEL SGAPLETIHE TCDEVNTHLR
EVKDIADEIG VGFIGLGAAP IWQHDEMPLM PKGRYQLMND YMERVGTMGR AMMRRTCTVQ
VNLDFASEAD MVQKLRVALA LQPVATALFA NSPFFEGKPN GLKSWRSHIW RHLDDARTGM
LPFVFEEGMG FERYADYALD VPMYFVYRDG KYINALGQSF RDFLKGELPA LPGETPTLSD
WADHLTTAFP EARIKKYMEM RGADGGPWRR LCALPAFWVG LMYNQSALDA AWDLVKGWDA
ETRENLRIEA AVKGLQAEVG AIKMHDLARE VLAISEAGLK ARARQGAGGL VPNETHFLNA
LRESVESGKV PADELLDRYN GDWNGDLTRI YADYSY
|
|---|
| |