| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3040 |
|---|
| Symbol | |
|---|
| ID | 4075134 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | + |
|---|
| Start bp | 6835 |
|---|
| End bp | 7581 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638004541 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_611276 |
|---|
| Protein GI | 99078018 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1126] ABC-type polar amino acid transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACA CCAAAGGCAT CAGTATTTCG GGGCTCAGTA AATCCTTCGG CGAGAGCACG
GTGCTGCGAG ATATCTCGCT TGAGATCCAG CCGGGGGAGC GGGTGGTCAT CATCGGCCCT
TCGGGCACCG GGAAATCCAC CCTGCTCAGA TGTTTGAACT TTCTGGACCG GCCCGATCGA
GGGGTGATCC GGGTCGGGGA CCTCAGTGTC GACGCCGCCA ACGCCAGCCG CGCAGAAATC
CTCGCGCTGC GCAGGCGGAC ATCCTTCGTG TTCCAGAACT ACGCGCTGTT TGCCAACAAA
ACCGCGCTGC AAAACATCAC GCAGGCACTA ATCACCGTAA AGGGCATGCC CAAGTCCGCA
GCCGACGCAC GCGCCCGCAC CATTTTGCAG GACACGGGGC TTTTGGACAA AGCTGATGCC
TATCCTGCGG CGCTTTCGGG CGGGCAGCAG CAGCGTGTCG GGATTGGACG CGCGATGGCG
CTTGATGCGG ATCTGATGCT CTTTGACGAG CCGACTTCGG CGCTGGACCC GGAATGGGTT
GGCGAGGTGC TGGACCTGAT GCGGCGCGTG GCAGAGCAGG GCCAGACCAT GCTGATCGTA
ACCCATGAGA TGCAATTCGC CCGCGAGATT GCGGATCGGA TCATTTTCAT GAGCGGCGGC
GATGTAATTG AGCAAGGCCC CCCGGATCAA ATCCTGAGCG ACCCGCAAGA CCCGCGCACC
CGCGCCTTTT TGCGCCGCGT GCAGTGA
|
|---|
| Protein sequence | MSNTKGISIS GLSKSFGEST VLRDISLEIQ PGERVVIIGP SGTGKSTLLR CLNFLDRPDR
GVIRVGDLSV DAANASRAEI LALRRRTSFV FQNYALFANK TALQNITQAL ITVKGMPKSA
ADARARTILQ DTGLLDKADA YPAALSGGQQ QRVGIGRAMA LDADLMLFDE PTSALDPEWV
GEVLDLMRRV AEQGQTMLIV THEMQFAREI ADRIIFMSGG DVIEQGPPDQ ILSDPQDPRT
RAFLRRVQ
|
|---|
| |