| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3776 |
|---|
| Symbol | |
|---|
| ID | 4074871 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008042 |
|---|
| Strand | - |
|---|
| Start bp | 22480 |
|---|
| End bp | 23481 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 638004435 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_611171 |
|---|
| Protein GI | 99077912 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 51 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAACCG CTCTCATCAC CGGCACGGCT GGCTTCATTG GCTACCATCT TGCGACTTAT
CTTCTAGCCT CAGGCTGGCA GGTTGTAGGG CTCGATTGTC TTTCACCTTA TTATGACATC
GCCTTAAAAA GGCGCCGCCA CGCTATGCTG GAGGTCAACG ATAATTTCAT CCCTGTGATC
GGCAAGCTCG AAGATCCAGG GCGCTTAATG GGCCTACTCG CTGACCACAA ACCCAATGCG
GTGATCCATC TGGCCGCTCA AGCCGGAGTG CGCCATTCAA TTGACGCGCC GCGCGACTAT
CTCGAGGCCA ACCTGATAGG TACTTTTGAA GTGCTGGAAG CTGCCCGCGC GCATCCGCCC
GAGCATATAA TGATTGCCTC CACGTCTTCG GCTTATGGTG CCAATACCAA CATCCCTTTC
GATGAGCACC AGAAAGCAGA TCATCAAATG TCATTTTATG CCGCCACCAA AAAGGCAGGC
GAGACGATGG CTCATTCCTA TGCACACCTC TATGGTCTAC CAACCACGAT GTTCCGGTTC
TTCACGGTGT ACGGCCCCTG GGGTCGACCG GATATGGCGT TGTTCAAGTT CACCAAAGCG
ATAGAGGCCG GTGAGGCGAT CGATGTCTAT AACCATGGAC GCATGAGCCG AGACTTTACT
TATATCGATG ATTTGGTGGC GGGTATCACC GGACTGATTG AGGCAGTGCC CGGTGATACG
CCTGTCTCTA CGCAAGACAC CCTGAGCCCA GTTGCCCCTT TCAGGATCGT CAATATCGGG
GCCTCAAAAC CCACGCCGCT GATGGATTAT ATTGCTGCGC TAGAAACCGC GCTAGAGACC
ACCGCCCGAA AGAACTTGAT GGAGATGCAG CCAGGAGACG TGCCGGCAAC CTGGGCAGAC
ACCACTTTGT TGAGCCAGCT TACCGGCTAT GAGCCTCAGG TTAGTGTCGA AGAGGGTGTC
GCCCGTTTTG TCGCTTGGTA CCGAGGTTAT TATGCCAGCT GA
|
|---|
| Protein sequence | MRTALITGTA GFIGYHLATY LLASGWQVVG LDCLSPYYDI ALKRRRHAML EVNDNFIPVI
GKLEDPGRLM GLLADHKPNA VIHLAAQAGV RHSIDAPRDY LEANLIGTFE VLEAARAHPP
EHIMIASTSS AYGANTNIPF DEHQKADHQM SFYAATKKAG ETMAHSYAHL YGLPTTMFRF
FTVYGPWGRP DMALFKFTKA IEAGEAIDVY NHGRMSRDFT YIDDLVAGIT GLIEAVPGDT
PVSTQDTLSP VAPFRIVNIG ASKPTPLMDY IAALETALET TARKNLMEMQ PGDVPATWAD
TTLLSQLTGY EPQVSVEEGV ARFVAWYRGY YAS
|
|---|
| |