| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_3191 |
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| Symbol | |
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| ID | 4074357 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008036 |
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| Strand | - |
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| Start bp | 1803 |
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| End bp | 4727 |
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| Gene Length | 2925 bp |
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| Protein Length | 974 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638004392 |
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| Product | conjugal transfer relaxase TraA |
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| Protein accession | YP_611123 |
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| Protein GI | 98152874 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02768] Ti-type conjugative transfer relaxase TraA |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCCGACGT GGCGTTTGCG GTGTAACTGG ATTGCCGACA TGGCAATCTT TCATTTCAGC
GCGAAGGTCA TCGGAAGGTC GAGCGGACGC AGTGCCGTGG CGGCTGCGGC CTATCGTGCG
GGCGAGCAAC TGCACGATGA GCGGATCGAC AGAACCCACG ATTTCACCAA CAAGGCAGGC
GTTCTTCATT CCGAAGTGAT GCTGCCCAAA GGCGCACCCG AAGCCCTCGC CGACCGCGCC
ACTTTGTGGA ACGCGGTCGA AGCTGCGGAG AAGCGCAAGG ATGCGCAGCT TGCCCGCGAG
GTCGAGTTCG CCCTGCCCCG CGAACTGTCG AAGAAAGACA ACATCAGGCT GGCGCGCGAG
TTCGTGAAGG CTGAATTCGT CGAAAAAGGC ATGATCGCCG ATCTCAATGT CCATTGGGAT
ATTGGCGAGG ACGGCAAAGC CAAGCCGCAC GCCCACGTCA TGCTGACCAT GCGCGAGGTT
ACCAAGGATG GCTTTGGCGC AAAAGTCCGC GACTGGAACA AGACCGCGCT GATCGAGCAG
TGGCGCGAGC GCTGGGCCGA TCATGTCAAC CGCGCGCTGG CGGAACGCGA CATCGATACG
CGGATCGATC ATCGCAGCCT GGAAGCGCAG GGCATTGCGC TGGAACCGCA GGACAAGATC
GGTCCCGCCG CCTCGCGCAT TGGCGGACGC GGTCTGGAAG CCGAGCGGAT TGAGGAACAC
CGCGCCATCG CCCAGCGCAA TGGCGAACGC ATAATCGCCA ATCCCTCGCT GGCCTTGGAT
GCGATCACGC ACCAGCAAGC CACCTTCACC AGGCGCGACC TTGCCGCCTT TGTTCACCGG
CATAGCGACG GGAAGGAGCA GTTTGACGCC GCCTACAATG CCGTGCGCGC GGCGCCCGAG
CTGATCGCAT TGGGCAAGGA TGGACGCGGG CAAGACCGCT TCACTTCGCG GGCGATGATC
GAGACCGAAC AGCGCCTGCA TTGCGCTGCC GACGCGATGG CGCAACGCGC TGGTCACGCC
GTAAATGATG TGCAGCGGAA CGCCGCGTTT GCAAGCGCCG CGAAGCGCGG TCTGGTGCTG
TCAGGCGAGC AGAAATCCGC CTTCGAGTAT GTCACCAAGA AGGGTGGCCT TGCCGTGATC
GTTGGCTATG CCGGGACCGG CAAAAGCGCG ATGCTGGGCG TGGCGCGCGA GGCATGGGAA
AGCGCGGGCT ACAATGTGCG TGGCGCAGCC CTGTCCGGCA TTACCGCCGA GGGTCTGGAA
AACGGCTCCG GCATCGCATC GCGCACCATC GCCAGCCTTG AGCATCAATG GGGCAAAGGG
TGCGAGCAGC TGACTGCCAA GGATGTGCTC GTCATTGACG AAGCGGGTAT GGTCGGCACG
CGCCAGATGG AGCGCGTGCT GTCCCATGCC GCAAAGTCCA GTGCGAAACT TGTCCTAGTC
GGTGACCAGC AACAGCTCCA GGCCATCGAG GCAGGTGCAG CATTCCGGGC AATCCACGAG
CGCCACGGCG GGGTCGAGAT CAGCGAGGTT CGCCGTCAGC TATCGGCATG GCAGCAGGAT
ACGACCAGGC AGCTCGCCAC GGGCCGCACG GGCGAAGCGA TCCGCACCTA CGAAGAGCGC
GGCATGGTCT ATGCCACCGA CACCCGCGAG GTCGCACGGA CAGAGCTTGT CGAGCGTTGG
GATCGCGAGC GGCAGGACAG CCCAGACGAA AGACGGATCA TCCTTACCCA CACCAATGAC
GAGGTCCGCG AGCTCAACCA GATGGCGCGC GAGAAAATGC GCGTGGCTGG CGCGCTAGGT
GCCGATGCCA CGATCAAGGC CGCACGCGGC GAACGGAAAT TTGCATCGGG GGACCGCATC
ATCTTCCTGC GCAACGAACG CGAACTTGGG GTGAAGAACG GGACGCTCGG CACGGTCGCG
ATGTCCAGCC CGCAGCGCAT GGCCGTGCGC ACGGACGATG GGCGGGAAGT TGCCTTCGAC
ACCAAGTACT ACGCCCACAT CGATCATGGC TACGCCGCCA CGATCCACAA GGCGCAAGGC
ATGACAGTGG ACCGCACGCA TATTCTCGCC ACACCGGGCA TGGACAGCCA TTCCGCCTAT
GTCGCCATGT CGCGTCACCG CGAGGGGCTA GCGCTGCATT ATGGGCGCGA TGACTTTGCC
GACCAGTCCA AACTTGTTCG CACCCTTAGC CGCGAGCGCG GGAAAGATAT GGCGGGCGAC
TACAAGCCCG AGCAGGCTTT CGCCGAACTG CGCGGAATCA GCTTCCGCGA GCGGGTAATG
GCGATGGTTC GGCAAGTGCC GGAGAAGGCC AAATCCATCT TCGGAAACTT CCGACCGCAG
GCCCGTCAGC TCGAACCGCT TCCGGCAAAG TCGAACACGC AGAACGACCA GCGTCGCGCG
GTCGAACGCT ATGCCCGCGC GCTTGGCGAT ATCGGAACGA TGCAAGCCCA GGGCTTGCCC
GTTCTCCCGC ACCAGAAGGA CGCGCTGGAG AAGGCAGGAA AAGCGCTCGA CGCGATTCGG
CCCCATGCGG CCACCGATCT CGCCAAGGCG CTGGAGCGGC GGCCTGAGCT GATCCCAGAG
GCCGCTGGCG GGCGTAGCCA GGAGGCCATG CGCGCCATGA ACCAAGAGGC CGCAGTGCGC
ACCGATCCTG CGCTGCGATC CGAGCGCTTT GTCAGTGATT GGCAGGGACT CAGCACGGCG
CGCAAGCAGC TTGAACAGCA GGGCGACCGC GCCGGTGCTG TCCGCGTATC GGCAAAGCAG
AACGAGCTGG CGAAGTCGCT TGAACGCGAC CCGCAAGTCG AAGGCCTGCT GCGCGGCAAG
ACCCGCGAAC TTGGCATCGA TCCGAAGCCG GAACGCAGCA TCGCCAAAGA ACTCACCGCA
ACCCTCGCCC GTGAACGCAC CCGCGCTTTC GACATGGGCA TTTAG
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| Protein sequence | MPTWRLRCNW IADMAIFHFS AKVIGRSSGR SAVAAAAYRA GEQLHDERID RTHDFTNKAG
VLHSEVMLPK GAPEALADRA TLWNAVEAAE KRKDAQLARE VEFALPRELS KKDNIRLARE
FVKAEFVEKG MIADLNVHWD IGEDGKAKPH AHVMLTMREV TKDGFGAKVR DWNKTALIEQ
WRERWADHVN RALAERDIDT RIDHRSLEAQ GIALEPQDKI GPAASRIGGR GLEAERIEEH
RAIAQRNGER IIANPSLALD AITHQQATFT RRDLAAFVHR HSDGKEQFDA AYNAVRAAPE
LIALGKDGRG QDRFTSRAMI ETEQRLHCAA DAMAQRAGHA VNDVQRNAAF ASAAKRGLVL
SGEQKSAFEY VTKKGGLAVI VGYAGTGKSA MLGVAREAWE SAGYNVRGAA LSGITAEGLE
NGSGIASRTI ASLEHQWGKG CEQLTAKDVL VIDEAGMVGT RQMERVLSHA AKSSAKLVLV
GDQQQLQAIE AGAAFRAIHE RHGGVEISEV RRQLSAWQQD TTRQLATGRT GEAIRTYEER
GMVYATDTRE VARTELVERW DRERQDSPDE RRIILTHTND EVRELNQMAR EKMRVAGALG
ADATIKAARG ERKFASGDRI IFLRNERELG VKNGTLGTVA MSSPQRMAVR TDDGREVAFD
TKYYAHIDHG YAATIHKAQG MTVDRTHILA TPGMDSHSAY VAMSRHREGL ALHYGRDDFA
DQSKLVRTLS RERGKDMAGD YKPEQAFAEL RGISFRERVM AMVRQVPEKA KSIFGNFRPQ
ARQLEPLPAK SNTQNDQRRA VERYARALGD IGTMQAQGLP VLPHQKDALE KAGKALDAIR
PHAATDLAKA LERRPELIPE AAGGRSQEAM RAMNQEAAVR TDPALRSERF VSDWQGLSTA
RKQLEQQGDR AGAVRVSAKQ NELAKSLERD PQVEGLLRGK TRELGIDPKP ERSIAKELTA
TLARERTRAF DMGI
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