| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dgeo_2780 |
|---|
| Symbol | |
|---|
| ID | 4074011 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Deinococcus geothermalis DSM 11300 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008010 |
|---|
| Strand | - |
|---|
| Start bp | 244677 |
|---|
| End bp | 246365 |
|---|
| Gene Length | 1689 bp |
|---|
| Protein Length | 562 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641228697 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_594286 |
|---|
| Protein GI | 94972246 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1472] Beta-glucosidase-related glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.330179 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACTTC CCGATCTGAG TGCATCCCCT TTCTTTCTCA ACGACGAGGC GCGGGCCTGG
GTCGCCCGCA CCCGCGACGC CCTGAGCTTG GACGAGAAGC TCGCGCAACT GCTCCTCCCC
ATCAGCCTGG GCTTGGACTG GGAGGAGCTC GACCGCTTCC TGAGCCTGGG GGTGGGCGGC
GTCTCCCGCT TTGCCACCCT CGATCCGCAG GCCCTGCGCG ACTCGGCCAC CTATCTGCAA
GAACGCAGCC GTATCCCCCT GCTGCTCAGC ACCGACCTCG AAGGCGGCGA GCTCGCCTCG
GTCGGCGGCC CGGCAGGCAC GCCCTACCCC AACCAGATGG CGGTGGCAGC GACCGACGAC
CCCGTGTTCG CGCGACGCTT CGGGCAGGTT CTGGGCCGCG AGGGCCGCGC GGTCGGTTTC
AACTGCACGT TCTCTCCAGT CACGGACCTG GATCTCAATC CCCTGAACCC CATCGTGAAC
ACCCGCTCGT TCGGCAGCGA TGTGGGGCGG GTGACGGCCT TCTGCGAGGC GGCGATTAGG
GGCTTCCAGG CCGAGGGCGT GGCCGCCTGC GCCAAGCACT GGCCCGGGGA CGGGGTGGAC
TATCGCAACC AGCACCTCGT CACGAGCGAG AACACGCTGG ACCTGCCCGC CTGGGAGGCA
AGTTACGGGG CGATGTACCG CCACCTGATC GCCTCGGGCG TGAAGATCGT CATGCCGGGG
CACATCACCC TGCCCGCCTA CGCACACGCC AGGGGCCGCC CGGACGAGGC CGACCTCCCC
GCCACCCTCT CCCCGCTGCT GACGACCACG CTGCTGCGGG ACGAACTGGG CTTTGGCGGG
GTGGTGGTCT CGGACGCCAC CGAGATGGGG GGCTTCACCT CGCAGGGGCC GCGAGAAGAC
CTCGTGCCCC AGGTCATCGC GGCGGGCTGC GACATCCTGC TCTTCCCCAC CGATGTGGAG
CGCGACCTGG AGTTCCTGCG GCGCGGCGTG CGGAACGGGC GGCTGAGCGA GGCGCGGGTG
GACGAGGCGG TCACGCGCGT GCTTGCTCTC AAGGCGTCAC TGGGCCTGCA CCAGAGCACA
GGCCTGCCGG ATCTCGGCAC GCTCCGCGCC CCGGAGCATC TGTCCTGGGC GGAAGAATGC
GCAGCACGGG CGGTGACGCT GGTGTCCGAC ACCCAGCACC TCCTGCCGCT CGATCCGGCC
CGGCATCGCC GCCTGCTGAT CATCCGGCAA CCCCAGCGCA GAAACGGCCT GGGCTTTCCG
CTGCCGGACC TGCGTGTCCC CGAACTGCTG GAACAGGCGG GGTTCGAGGT GACCCTCTAC
ACCCCCCAGA CCCATGTCAG CCCCGACCTC TACGACGCGC TGCTGTACGT GCTGGCCGAG
GAGGCGCTGA TGGTCACCCC GGACCTGCGG CTGGACTGGG TGGAGTTGCA CGGCACCCCC
TTCCGGGCGA TGGAGCGGTT CTGGGACGTG CTGCCGACCG CCATCGTTTC CCTGGGCACG
CCGCGCTACG CCCAGGACGC GCCGCGCTGC CGGACGCTCG TCAACGCCTA CTCGCCGGTC
ATGCCGGTGC AGGAGGCCGT GGTGCGCGCC CTGACCGGAC AGCAGCCATT CCAGGGGGTC
AGCCCGGTGG ACGCCTCCTC CGCCCTGCGC CCGGTCCGCG AGTGGCGCAA CCTGATGGTG
GAGGGGTAA
|
|---|
| Protein sequence | MTLPDLSASP FFLNDEARAW VARTRDALSL DEKLAQLLLP ISLGLDWEEL DRFLSLGVGG
VSRFATLDPQ ALRDSATYLQ ERSRIPLLLS TDLEGGELAS VGGPAGTPYP NQMAVAATDD
PVFARRFGQV LGREGRAVGF NCTFSPVTDL DLNPLNPIVN TRSFGSDVGR VTAFCEAAIR
GFQAEGVAAC AKHWPGDGVD YRNQHLVTSE NTLDLPAWEA SYGAMYRHLI ASGVKIVMPG
HITLPAYAHA RGRPDEADLP ATLSPLLTTT LLRDELGFGG VVVSDATEMG GFTSQGPRED
LVPQVIAAGC DILLFPTDVE RDLEFLRRGV RNGRLSEARV DEAVTRVLAL KASLGLHQST
GLPDLGTLRA PEHLSWAEEC AARAVTLVSD TQHLLPLDPA RHRRLLIIRQ PQRRNGLGFP
LPDLRVPELL EQAGFEVTLY TPQTHVSPDL YDALLYVLAE EALMVTPDLR LDWVELHGTP
FRAMERFWDV LPTAIVSLGT PRYAQDAPRC RTLVNAYSPV MPVQEAVVRA LTGQQPFQGV
SPVDASSALR PVREWRNLMV EG
|
|---|
| |