| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_4558 |
|---|
| Symbol | |
|---|
| ID | 4071503 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 5404860 |
|---|
| End bp | 5405831 |
|---|
| Gene Length | 972 bp |
|---|
| Protein Length | 323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637986598 |
|---|
| Product | lysine decarboxylase transcriptional regulator, CadC |
|---|
| Protein accession | YP_593632 |
|---|
| Protein GI | 94971584 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG3710] DNA-binding winged-HTH domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0557135 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAGGA GCACGACAAA CATCACGCCC CACATCTTCA TGCGCTCTCC GCGCCAACGG
TCTGGCTGCT TCGGTTCCAC GCGTCCATTC TACGGCGTTG TAAACTTTGT TCGAATGTCG
GCAACAACGG GAACGCCGGA GCGTCGCGCC AAGTTCGGGC TTTACGAAGC CAACTTCGCC
AGCGGCGAGC TGCGCAAGAA CGGCGCCAAG CTGAAATTGC AGGAGCAGCC GTTTCAGGTG
CTGGCGCTGC TACTCGACCG CGCCGGGCAA GTCGTAACGC GAGAAGAGAT CCAGCAAAAG
CTCTGGCCCG CCGACACGTT CGTTGACTTC GATCACAGCC TCAACACGGC GATCAACAAA
TTGCGCGACG TGCTCGGCGA CACGGCATCG AACCCGCGCT TCATCGAGAC GCTCCCGCGT
CGCGGCTATC GCTTCATCGC CCCCGTCGAA TGGAATGAAC CTTCTGTCAT CCCGAGCGGA
GCCGCGCCAA GCGCGACGGA GTCGAAGGAC CCCTCTCGTC AAACCGAACC GTCAATCGCC
ACGATCGCGG AGCCCGAGCT TCCGCAAGCC GATCACCGCA TCACCCGGCT GCTCTTCGGC
GGATTGCAGC TGATGTACCT GATCTTCTAC GCCTGCGGCT TGTGGCGGCT CGACGAGATC
GGCGACATCG CCGAAGACCA CTTCCACGTT GCCGGTGGCA AAATCGAAGC GCTCGTGCTT
GTCACGGCAG TCATCGGGAT CGCGCTGCGC TTGTACACGC TGAGCGCGAC GGGCTTCAAC
TACCGCTTGC TCGGCGCGAA GTTCCGTAAG CTGATTCCGC TGGTCTATGT GCTCGACCTG
ATCTGGGCAT TCTCGCCCTT CCTGCTGCAG CCGCGCATCG GCCTTGGGCT GGCGTTTGCC
GCGTGCGCGG CACTGCTGTA TTCGCCGTTT GCGCAGCGTA TCCTGGCGAT GATCACGTGG
CCTGCGAAGT AG
|
|---|
| Protein sequence | MMRSTTNITP HIFMRSPRQR SGCFGSTRPF YGVVNFVRMS ATTGTPERRA KFGLYEANFA
SGELRKNGAK LKLQEQPFQV LALLLDRAGQ VVTREEIQQK LWPADTFVDF DHSLNTAINK
LRDVLGDTAS NPRFIETLPR RGYRFIAPVE WNEPSVIPSG AAPSATESKD PSRQTEPSIA
TIAEPELPQA DHRITRLLFG GLQLMYLIFY ACGLWRLDEI GDIAEDHFHV AGGKIEALVL
VTAVIGIALR LYTLSATGFN YRLLGAKFRK LIPLVYVLDL IWAFSPFLLQ PRIGLGLAFA
ACAALLYSPF AQRILAMITW PAK
|
|---|
| |