| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_3965 |
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| Symbol | |
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| ID | 4072438 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Koribacter versatilis Ellin345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008009 |
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| Strand | - |
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| Start bp | 4690249 |
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| End bp | 4692732 |
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| Gene Length | 2484 bp |
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| Protein Length | 827 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637985992 |
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| Product | ribonuclease R |
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| Protein accession | YP_593039 |
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| Protein GI | 94970991 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.120955 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.449748 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCACTG ACCAACAGAT CCTGGACCAC ATAGAACGGC AGGCGCACCA GTCTGCGAAT
TTCAAGCAAT TGGTGCGTGA AATGCGGCTG CGCGGGCCAG ACCGCGACCA ACTGGGGCGT
CGGCTGGAAT CACTGGTGAA GCGCGGAAAA CTCGTAACGG CCGCCGCCGG GCGCTATGCC
ATGGTGAAGA CAACGCGGGC GCAGAACCTG ATTGCCGGAA AACTCAGCAT GCATCGCGAT
GGGTATGGGT TCGTGATGCC GGGCGCGGCC GAGGTGAAGA GCGCGATCGA GGGCGACATC
TACATTCCGC CGCACGCGAT TGGCTCGGCA ATGCATGGCG ATGAGGTGCT GGCCGAGATC
GTGGCGACGA AGAAGGACGG TCGCGCCGAG GGGCGTATTC TCCGCACGCT GAACCGGGCA
CACACCAGCG TGGTCGGCAC GTTCCACTAC GACAAGGTCA ATTTCGTGCG GCCGATCGAC
GAGAAGATCA CCCAGGACAT CGTGATTCCG AAGGGCATGG AGTGGCCTCC GGACGTGGAG
CGCGAGGAAG GTGAGAAGCG CAAGAAGCGC TCGGAGCAAG ATCGCGTGAT TGGCACGGAG
GCGAAGCGGC GGGAGTGGAC GGACCTCGAC AACCTCGTAG TGAACGTGGA GATCACGGAG
TGGCCGTCGC CGACGCAGAG CCCGCGCGGG CGGGTGGTGG AGATCCTCGG GTACGAGGAC
GATTTCGGTG TGGATACCGA GATCATGATC CGTAAGCACC ACCTGCCGCA CCAGTTTCCG
GCAGCGGTGC TGAGCGAGGC GCGCAGCTTC AGCCCGGAGA TTCCGGCGAA GGAAATCAAG
CATCGGCGGG ATTATCGTGA GCTGCCGATC GTGACCATCG ACGGCGAGAC CGCGCGCGAC
TTCGACGATG CGGTGCTGGT GAGCCACCTG CCGAACGGGA ACTTCGAACT GCAGGTGCAC
ATTGCGGACG TGGCGCACTA CGTGACCGAT GAGTCAGACA TTGACCTTGA GGCGCGGCTG
CGCGGGACGT CGGTGTACTT TCCGGACCGC GCGGTGCCGA TGCTGCCGCT GGAGCTCTCG
ACCGACATCT GCTCGCTGCG GCCGCAGGTG GAGCGACTGG TGCTCTCGTG CGTGATGGAG
ATCGACCACC AGGGCGAGAT CGTGGGCTAC GAGTTGAACG AAGGCGTGAT CCGCTCGGCT
GAACGTATGA CGTACACCGC CGTGCACGGC GTGCTGCAAG GTGATACGGA GTTGCGCACG
CGTTATGCGC CGCTAGTGAA GAACTTCGAG TTGATGCGCG ACCTGGCGTC GATCCTGAAC
AAGAAACGAC AAAAGCGCGG GTCGATCGAT TTCGATTTGC CGGAGCCGGT GATCGAGTTC
GACGAGAACG GGCTCATGAA GGGCGTGACC CGTTCGGAGC GCAACGAGGC GCATCGGCTC
ATCGAAGAGT TCATGCTGGC AGCGAACGAG AGCGTCGCGA CGTATCTCGA GGCGCGGAAG
ATTGCTTCGC TGTATCGCAT CCACGAGAAG CCGGACCCGA AGCGCGTGTA CGAGTTTGAG
ACGCTGGCGG CGAGCTTCGG ATATTCGCTG GGCGTGGGTT CGCTACCGAT TGAACGCGTA
CACCTGAAGG CCGATAAGCG CGCGCGGCAT GGAACCGGCA GGCGCTCGGA GCCAATCGAG
ATACCGAAGG ATGTGCACAT TACGCCGCGG ATGTACCAGA AGCTGACGCA GAAGCTCGAA
GGCAAGCCGG AAGAGCGCAT CCTGAGCTAC CTGATGCTGC GGTCGCTGCG CCAAGCGCGC
TACTCGGAGA AGAACGAAGG CCACTTCGCG CTGGCGGCTA CGAGCTATAC GCACTTCACG
TCGCCCATCC GACGGTATCC GGACTTGATC GTGCACCGCA TCCTGAAACA AGTGTTGAAG
GAGCAAGCCG AGAAGAACGA TCACGGTGTG CCCGTCGGGG TTGGCGGTGC GGTGAACGAA
GTCGACGGAC ACTCGCCGTG GAGCAAGCGC GACGGGCACG AGCGCAAGGG CAAGCAGCAA
CACGAAGATC GTCCGCCGCT CACGGGGCCG ATTCCCGAAG AACAGTTACG GCAGATTGCG
GAAGAGAGCA GCGATGCCGA GCGTCGCGCC GACGACGCCG AGCGCGAGCT GCTGGAGTGG
AAGAAGATCA AGTTCATGCA GGACCGTGTC GGCGAGGAGT TCACCGGCCT GATCGTGAGC
GTGACCAAGT ACGGGCTCTT CGTGGAACTG ACGGATTTGT TCGTCGAGGG TCTGGTGCCG
CTGCTTACGC TACAGGGCGA CCATTTCAAC TATCACGAGA ACACCAAGCA ACTCATTGGG
GAGCGCAGCC GGAAGACGTA CTCGCTCGGC GACAAGGTGC GCGTGATCCT CGACCGCATT
GATCGCATGC AGCGGAAGTT GCAGTTTGCG GTGGTGGAAG ACGAGCCGCA CCGGGCGGAG
GGAAAGCACA AGAAGTCGCG CTGA
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| Protein sequence | MLTDQQILDH IERQAHQSAN FKQLVREMRL RGPDRDQLGR RLESLVKRGK LVTAAAGRYA
MVKTTRAQNL IAGKLSMHRD GYGFVMPGAA EVKSAIEGDI YIPPHAIGSA MHGDEVLAEI
VATKKDGRAE GRILRTLNRA HTSVVGTFHY DKVNFVRPID EKITQDIVIP KGMEWPPDVE
REEGEKRKKR SEQDRVIGTE AKRREWTDLD NLVVNVEITE WPSPTQSPRG RVVEILGYED
DFGVDTEIMI RKHHLPHQFP AAVLSEARSF SPEIPAKEIK HRRDYRELPI VTIDGETARD
FDDAVLVSHL PNGNFELQVH IADVAHYVTD ESDIDLEARL RGTSVYFPDR AVPMLPLELS
TDICSLRPQV ERLVLSCVME IDHQGEIVGY ELNEGVIRSA ERMTYTAVHG VLQGDTELRT
RYAPLVKNFE LMRDLASILN KKRQKRGSID FDLPEPVIEF DENGLMKGVT RSERNEAHRL
IEEFMLAANE SVATYLEARK IASLYRIHEK PDPKRVYEFE TLAASFGYSL GVGSLPIERV
HLKADKRARH GTGRRSEPIE IPKDVHITPR MYQKLTQKLE GKPEERILSY LMLRSLRQAR
YSEKNEGHFA LAATSYTHFT SPIRRYPDLI VHRILKQVLK EQAEKNDHGV PVGVGGAVNE
VDGHSPWSKR DGHERKGKQQ HEDRPPLTGP IPEEQLRQIA EESSDAERRA DDAERELLEW
KKIKFMQDRV GEEFTGLIVS VTKYGLFVEL TDLFVEGLVP LLTLQGDHFN YHENTKQLIG
ERSRKTYSLG DKVRVILDRI DRMQRKLQFA VVEDEPHRAE GKHKKSR
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