| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_3916 |
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| Symbol | def |
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| ID | 4071299 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Koribacter versatilis Ellin345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008009 |
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| Strand | + |
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| Start bp | 4630839 |
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| End bp | 4631465 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637985942 |
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| Product | peptide deformylase |
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| Protein accession | YP_592990 |
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| Protein GI | 94970942 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.511454 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0468935 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCTAGCA CGCCATTTGC CATGTATGAT GCCGCGATGC GATTGAAACT CGTCCAGGCG
GGCGAACCAG TTCTGCGCAC TCCGGCGGAG CCGCTCGCGA TCAAGGAGAT AGCCAGCCGC
GAAATTGCCC GCCTCATCGA AGACATGCGC GACACTCTGG AAGACGCGCC TGGAGTCGGC
TTGGCCGCGC CGCAGGTCGG TGTGCCGATT CAGCTAGCAA TCATCGAGGA CCGCGCGGAG
TACTCGAAAG ACATCCCCAC TGAACAACTC GCGGAACGCG GGCGCGTGCC CGTCCCCTTC
CACGTGATTA TCAATCCGGT CCTCAAGCCA CTCGGAAAAT CACAAGTGGA TTTCTTCGAG
GGCTGCCTCA GCGTGGCCGG CTTCATCGCG GTCGTCCCGC GTTATCGCAA GGTCCGAGTC
ACCTGTCTTG ACGAAAACGG GGCCCAGCGC CGGATCGAGG CTTCGGGTTG GTACGCGCGC
ATTCTTCAGC ACGAAATCGA TCATCTGAAC GGGACTCTTT ATGTAGATCG AATGCGTTCA
CAAACATTCG CGTCACTGGA AAACTATGCG CGGTTCCTGA AGCACAAAAG TGTCAAGGAT
GTTTTGCGCG ACTGGAAGGC CCGATAA
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| Protein sequence | MPSTPFAMYD AAMRLKLVQA GEPVLRTPAE PLAIKEIASR EIARLIEDMR DTLEDAPGVG
LAAPQVGVPI QLAIIEDRAE YSKDIPTEQL AERGRVPVPF HVIINPVLKP LGKSQVDFFE
GCLSVAGFIA VVPRYRKVRV TCLDENGAQR RIEASGWYAR ILQHEIDHLN GTLYVDRMRS
QTFASLENYA RFLKHKSVKD VLRDWKAR
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