| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_1980 |
|---|
| Symbol | |
|---|
| ID | 4069366 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 2372766 |
|---|
| End bp | 2373989 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637983993 |
|---|
| Product | cystathionine beta-lyase |
|---|
| Protein accession | YP_591055 |
|---|
| Protein GI | 94969007 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
|---|
| TIGRFAM ID | [TIGR01324] cystathionine beta-lyase, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.865383 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCCGTTT GGACAATGTC CGCGTTCGGG AACCTCTCGC CGCAAGTTCT CTATACTGTC
GCCATGAAGA AGAGTTGGAA GACAAAGCTG ATCCACGGCG ATAGCCATGC CCCGGAGGGA
TTCCGCTCGC TGGTAACTCC TACCTACCGC GGATCCACCG TGCTCTTCCC CGATGCTGAA
TCGGTTACGG ACCAGTGGGA CCAGCATCGC GTGGGCTACA CCTACGGCCT CTACGGCACG
CCGACGACGT TGGAACTCGC AGCACGCGTC TGCGAGCTCG AAGACGGCGA ACACACCATC
ATCACCGCCG GAGGCCAGGG CGCGATTTCG CTCATCCAAC TCTCGCTGCT CAATGCGGGT
GACCACATCC TGATCCCCGA GAATATCTAT GGCCCCAATC GCAAGTTGGC ATATTCCGTT
CTCAAGCGCT TCGGCGTGGA GGTCACGGTT TATCCGCCCT TGATCGGCGC GGGAATCGCA
GAGTTGATCA AGGACAACAC GCGTCTCGTC TGGTGCGAAA GTCCCGGCTC ACTGACGATG
GAAGTGCAAG ATGTTCCTGC AATCGCGAAA GCGGCGCACG CCCGCGGCGC GCTGGTAGTG
CTCGATAACA CCTGGTCGTC TGGAATCTTT TTCCGGGCCT TCGACCACGG CGTTGACGTC
GAGATGCAGG CGCTCACGAA ATATGTCGCT GGCCACAGCG ATGTTCTTCT TGGCGCAATT
ACTATTCGCG ACCGCGCGAT CTACGAAAAG CTCGGCAATA CCTACCAGGT GCTCGGCTGC
GCCCCATCGC CTGATGATTG CCAGCTCGCA CTACGCGGCA TGAAGACGCT CGGGGTGCGC
CTCGCGCAGA TTGGAAGTTC CGCCCTGAGG GTTGCGCAAT GGCTCGCAGC GCGACCGGAA
ATCGAAACCG TGCTACATCC CGCGCTTCCC TCCTGTCCGG GCCACGAGTT CTGGGAGCGC
GACTTCACTG GGTCGGCGGG ATTGTTTTCG ATCGTCTTTA AGTCCGGCCC CACGAAGCAA
CAGGTGCAGG CTTTTGTGAA TGCACTGGAG CTTTTCGAGA TCGGATATAG CTGGGGTGGA
GTCGCAAGCC TCGCCGTCAA TTACGACCTC AGCCACGCGA AGGGACGCTC GGAGTATGGC
CATCGCATCG TGCGGCTGTA TATAGGGTTG GAGGAACCGG AAGAGCTTAT TGCGGATTTG
GAGCAGGCAC TCGGAAAGAT CTAG
|
|---|
| Protein sequence | MSVWTMSAFG NLSPQVLYTV AMKKSWKTKL IHGDSHAPEG FRSLVTPTYR GSTVLFPDAE
SVTDQWDQHR VGYTYGLYGT PTTLELAARV CELEDGEHTI ITAGGQGAIS LIQLSLLNAG
DHILIPENIY GPNRKLAYSV LKRFGVEVTV YPPLIGAGIA ELIKDNTRLV WCESPGSLTM
EVQDVPAIAK AAHARGALVV LDNTWSSGIF FRAFDHGVDV EMQALTKYVA GHSDVLLGAI
TIRDRAIYEK LGNTYQVLGC APSPDDCQLA LRGMKTLGVR LAQIGSSALR VAQWLAARPE
IETVLHPALP SCPGHEFWER DFTGSAGLFS IVFKSGPTKQ QVQAFVNALE LFEIGYSWGG
VASLAVNYDL SHAKGRSEYG HRIVRLYIGL EEPEELIADL EQALGKI
|
|---|
| |