| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_1220 |
|---|
| Symbol | |
|---|
| ID | 4068560 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 1504889 |
|---|
| End bp | 1506718 |
|---|
| Gene Length | 1830 bp |
|---|
| Protein Length | 609 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637983229 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_590296 |
|---|
| Protein GI | 94968248 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1807] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00113386 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00622178 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGAACCACA AGCGTCAACG AACAGATTTC AACTTTTCTC ACGAATTCTG TCCGGCGAGC
ACCTGCAAAC CCCATGGTAT CATCCGCCTC ATCCAGCAAA TGTCTTACGT ACCGGCCCCC
GACAACCGCC AACCCGGCTT GCTAAGCGGG TCCCGCGCCA TTTTGGCACT CATTCTCGGA
GTCACTGCTC TCGTCTACGC CGGTACCCTG CAATTTGGCT TTACCTACGA CGACACCCCA
CAAATCGTAA CCAATCCACG CATTTCCTCA TGGAGTTACC TGCCCAAGTA CTTCACGGAG
CACGTCTGGG CGCAGATTTC TGCCTCCGGA ACATACTACC GGCCCTTATT TTTGTTGTGG
TTACGTCTGA ATCACGCGTT ATTCGGAGTC CAGAACCCGT TTCCGTGGCA CTTGACGACC
GTGCTTTTGC ATCTTCTCGC GGTGACGTTG GTTTTCCGGC TCCTGATCAA GACATTCAGC
CTCGAAGTCG CCGGAATCGC GACTTTCGTG TTCGCGCTGC ACCCCGGACA CGTTGAATCC
GTCGCGTGGA TCTCCGGCTG TACTGAGCCG CTCATGACCT GTGCGCTCGT CGGCGCAATC
CTCTGCTGGA CGAATCGCAG AAATTCTCGG GGTGCGCTTT GGCTCGCGGC CTCATGGCTG
CTCTGTCTCG CCAGCCTGTT GATCAAAGAA ACCGCAGTGC TGTTGCCGGT CCTGATCTTT
GTCTATTCAC TTTTCGAAGA CCGTGAATCG CCGCGCTTCG ACGCTTACAA GCGCGCAGTC
CTGAACACGC TGCCCTTCGC GGTAATCACG GTCGCGGAAT TGATGGTTCG CGCTCGCGTG
CTTCGCGGCG GCGTCGCCGA CGAACCGCAT CCGGCGATGC AAACGCTGCT GACAGTTCCA
TCAGCGATTT CTTTTTACAT TCAACATCTG TTCTGGCCCG TGAAATTGAG CCCTTTCTAC
GGCCTCGAGC TGATGCAAAA ATTCAGCGCC GTTGTCGTGA TTCCGGCGGC TCTCGTCGCT
CTCTGCGCCG TCGCACTTCT TCTTGTCCTC GCATTTCGCT CGCGCACATT GCTGATCGCC
GTCGCATGGC TTGTTTTACC TGTGCTGCCT GCGCTCATTG GCATCCGCCT CTTTGATAGC
AACGATATCG TTCACGACCG CTATCTCTAT CTCTCGACGA TCGGACTAGG ACTTCTTCTT
GGACTTGCGA TCTCCCGGCT TCCGGCGGCG GGCACAGAGA TTTTCCGCCT CCCACGCGCG
CAATTTGCGT GCATCGCGCT TATCGCGATC GCAATTGCTG CTGGAACCGC GCTGGAAATT
CGCCCCTGGA GCAACAATCT CGCCTTGTTC CTCCGTGGGG TCGACGTCGC ACCCAACAGC
ACGCCGGCCT ACAGTCATCT CGCCTTCGAG GTTTACAAGC GCGGCGATGC CGCGGATGCC
GAGCGCCTCT ACAAACACGC CGTGGCGCTT GGCCCCAACG ACTGGCCCGC GAATTTTGGC
TTGGCTATGA TCGAAATGCG CATGTCGAAC TGGAACGAGG CCGACCGATT TTTCCAACGC
GCAATCGAGA TCAGCCCTTC GGTGAGCAAT GGAAGCTATC TTCTGCAAGC ACGGGTCCGG
GTCGAAATGC AGCATTACGA TGCCGCCGAA AAAAGCGTGC GGGAAGCGAT CGACAACTGG
CCGAACATCG CGAGCCAGCA TTTATTATTG GCTCAGATCC TGACAAAGCA AGGGCGCATT
GAGGAAGCCC GCTCTGAATA TCAGAAGGAG TTGACGCTTA ATCCCACCTC CACCGAAGCA
CGGATGGGAC TCGCGGAAAT TGGGCAGTGA
|
|---|
| Protein sequence | MNHKRQRTDF NFSHEFCPAS TCKPHGIIRL IQQMSYVPAP DNRQPGLLSG SRAILALILG
VTALVYAGTL QFGFTYDDTP QIVTNPRISS WSYLPKYFTE HVWAQISASG TYYRPLFLLW
LRLNHALFGV QNPFPWHLTT VLLHLLAVTL VFRLLIKTFS LEVAGIATFV FALHPGHVES
VAWISGCTEP LMTCALVGAI LCWTNRRNSR GALWLAASWL LCLASLLIKE TAVLLPVLIF
VYSLFEDRES PRFDAYKRAV LNTLPFAVIT VAELMVRARV LRGGVADEPH PAMQTLLTVP
SAISFYIQHL FWPVKLSPFY GLELMQKFSA VVVIPAALVA LCAVALLLVL AFRSRTLLIA
VAWLVLPVLP ALIGIRLFDS NDIVHDRYLY LSTIGLGLLL GLAISRLPAA GTEIFRLPRA
QFACIALIAI AIAAGTALEI RPWSNNLALF LRGVDVAPNS TPAYSHLAFE VYKRGDAADA
ERLYKHAVAL GPNDWPANFG LAMIEMRMSN WNEADRFFQR AIEISPSVSN GSYLLQARVR
VEMQHYDAAE KSVREAIDNW PNIASQHLLL AQILTKQGRI EEARSEYQKE LTLNPTSTEA
RMGLAEIGQ
|
|---|
| |