| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_1133 |
|---|
| Symbol | |
|---|
| ID | 4069904 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 1411109 |
|---|
| End bp | 1412473 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637983143 |
|---|
| Product | phage integrase |
|---|
| Protein accession | YP_590210 |
|---|
| Protein GI | 94968162 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00289406 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000832848 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGAACAATT CAATTGTGGA GGTAGTTCCA AGATCGAATG GCGCGTTGCT TGACACGTAT
CAGGCAGCCT CATTCCTCAA CGTTTCAGAA AGCTGGGTGC GAAGGCATCA GGCTGAATTG
CCATCGGTAA CAGTCGGCAG ACTCGTTCGA TTCGATCCTG CGTTGCTGCA ACGAAACTTT
TCAGGCAGAA TGGCGCACGG GAAACCGCTG AACTCATCGG GAGAAAGAAG AGCACCGATG
CAAATTCAGC GTTATCAGAA CGGACATGTT TACAAAAGGG GCACCAAATT GAAGGTGTGG
TACGGTCGTT TCCGAGAGGA CTTGCTCACG CCGGGCGGGG GCATTGTTCG ACGTACTCGC
AACATCCGAC TTGGCACGAT TGCGGAGTTG CCTTCGAGGG CCTCCGCTGT GATCCGATTG
CAGGAAAATA TCGCCTCTCA CAAACCCAAG ACTGCCATGA CGGTTTCGGA GCTACACAGG
CGATGGGAGA ACGCAGAACT TCCGACGATC AAGCGAAACA CTGCTGGGTA CTATCAGAAG
ATTTTGCGAT GCCACATTCT TCCCACGTTC GGTCAACGCG AAATTGGAAG CATCACTCGC
GAAGACGTGC AGACGTTTCT CGCAAGTCAG GCGGGGAAAT ATTCTCGCAA CACACTTCGA
GGGATGCGGG TTTCGCTTGG CAGAATTCTG ACGTGGGCGG TGAACTGCGC TTGGCTGGAA
AAGAATCCCT GTTCAAAGGT ACCGCTACCG CATGTTGAAA AGGGCGAAAT ACAACGCTCT
ATTCTCATGA CGGAGCAAGT TACCGCGATT GCCGACAAGT TGGAAGAGCC TTACAGAACG
CTCGTTCTCC TTCTTGCGGT GACAGGCCTT CGGATTGGGG AGGCAATTGG AATCAAGTGG
TCTGACTTCG ACGGCGACAT TCTGCATGTG TCGCGCACCA TTTATGACGG CAAAGCAGAC
TCTACAAAGA CAGCAAGTTC GAATCGAAAA CTGCCCATCC CGGCTGCTCT CATTTCTCGG
ATGAGAATGT TGGGAGATGG GGAGTTTATC TTTCACTCGC GGGCAGGGTC ACCAGTTAAT
CCCGGCAACG CTCTGAAGCG TTACTTGCGA CCAGCCGCGA AGGCCTTAGG AATTCGACTC
ACGGGCTGGC ATGACTTCAG GCACACGCAA GCAACGCAAT TGCTGCGAAG TGGATCGTCG
CCGAAAGTGG TTTCGGGAAT TTTGGGTCAC TCCGACGTCG GAATCACTTT GAACGTCTAC
GAGCACACAG AGACAGAAAT CTTTCGTGCG CCACTGGAAC GAATAGCCGA CCAGTTGTTA
CCAACTGTTA CCAAGTCGCT CCAAGCTGTC GAATCAAATG CTTGA
|
|---|
| Protein sequence | MNNSIVEVVP RSNGALLDTY QAASFLNVSE SWVRRHQAEL PSVTVGRLVR FDPALLQRNF
SGRMAHGKPL NSSGERRAPM QIQRYQNGHV YKRGTKLKVW YGRFREDLLT PGGGIVRRTR
NIRLGTIAEL PSRASAVIRL QENIASHKPK TAMTVSELHR RWENAELPTI KRNTAGYYQK
ILRCHILPTF GQREIGSITR EDVQTFLASQ AGKYSRNTLR GMRVSLGRIL TWAVNCAWLE
KNPCSKVPLP HVEKGEIQRS ILMTEQVTAI ADKLEEPYRT LVLLLAVTGL RIGEAIGIKW
SDFDGDILHV SRTIYDGKAD STKTASSNRK LPIPAALISR MRMLGDGEFI FHSRAGSPVN
PGNALKRYLR PAAKALGIRL TGWHDFRHTQ ATQLLRSGSS PKVVSGILGH SDVGITLNVY
EHTETEIFRA PLERIADQLL PTVTKSLQAV ESNA
|
|---|
| |