Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Acid345_0397 |
Symbol | |
ID | 4069219 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Koribacter versatilis Ellin345 |
Kingdom | Bacteria |
Replicon accession | NC_008009 |
Strand | + |
Start bp | 458230 |
End bp | 461694 |
Gene Length | 3465 bp |
Protein Length | 1154 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637982400 |
Product | polysaccharide deacetylase |
Protein accession | YP_589476 |
Protein GI | 94967428 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis [R] General function prediction only |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase [COG1215] Glycosyltransferases, probably involved in cell wall biogenesis [COG3858] Predicted glycosyl hydrolase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.553625 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCAGGTC CTGTTTTCTA CGATCCAGAG CGTAAGCGGT GGCGCCGGTT GCGGATGGCG CTCGACATCA CGGGCGTGCT CGCGACGCTG CTGATCGTGT TTTTCATTGT GAGTATTGTG CGGAACACCA ATGTTCCATC GCTCGGCTTG ACCGAAGCGA AAAAGCCCTA CCACGCGCTC AAGGAAAATC AAAAGCGGAA GTATTTTCGG AAGGCGAGTA CGCACCGCAA GACGAAGCAG GCGCCGTCGC AGGTGCAACT GAACACGACG GAAGGAATCC GCGCGGCGTT TTATGTGGAT TGGGATGCGG CGAGTTTTTC TTCGCTGAAG CAGTACTATC CGCAGATTGA CTTGCTGTTT CCCGAATTTC TCCATGTGCT GACGGAGGAT GGGCATATCC AGGGCGTGAC GGCGGAGAAC AAGTTGTTCG ATGTGATGGA TGCGAGCGGC AAGGTGCGTC CGGTGGACGA CAAGTTGATG CCGTATCTGA AGGCGGAAAA AGCGGAGACG GAAGTGTTTC CGCTGGTGAA CAACTTCGAT CCTATCGCGA ATGAGTGGAA GAGCGACATC GGCGATTTCC TGGACGATCC GGCATCACGC GCGAACTTCC GAAAACAGAT CGACGCCTTC CTGGGGAGCG ATCGATACCG CGGACTGACG CTGGACTTCG AAGAAATTCC AGTGGACTCC ATGCCGGGGT TCGAGGCGCT GGTGAGTGAG ATTTATCAGG ACATGCACGC CAGCGGGAAG AAGTTGTATA TCAGCGTGCC GGCGAAGAAC ACGGACTTCA ACTACGAGGC GGTGGCAAAG AATTCCGACG GCCTGATCCT GATGAATTAC GACGAACACT ATCCTGGCGG GCCGGCGGGG GCGGTCGCGT CGCAGGATTG GTTTGTCGAG AACCTGAAGT TTGCGGTGAA ACATGTGCCG CGCGAGAAGA TCATCTGCGC GATCAGCAAC TACGGGTATG AGTGGACGAC GATCGGCAAC GCGAAGCTGC CGCAGACGGC GCACACGGTG AGCACGCAAG AGGCATGGAC GACGGCGGAG GAGTCGGATG CGGATGTTGA ACTGGATGGC GACGCGCTGA ATCCGCACAT TACGTTCATG GAAGGCGAGA ACGCGCGCCA CGATGTGTGG TTCACCGATG GAGTGACGGC GCTGAACCAG ATGCGCGCGG CGCAGCAATT GGGGATCGAT ACGTTTGCGT TGTGGCGCCT GGGGTCGGAA GACAGGTCGT TATGGAATGT GTGGGACCGT CCGGGGGAGC AGGGTGCGCC GGACAAGTTA AAGGATGTGC CTCCGGGACA AGACGTGGAC ATGGAGGACG CCGGAGAGAT TCTGCAGATA GAGGAGAGGC CGGCGCCGGG GCAGAGGACG ATCAAAGTTG ATGCTGAGAC GGGACTGATC AGCGAGGAAG ACTTCACGAA GATTCCGTCG CCGTACCGGA TTGCACGCTA TGGCAGCAGC GATAAGAAGA TCGCGATCAC GTTTGACGAT GGGCCGGACC CGACTTGGAC GCCGAAGATC ATGGAAGTGC TGGATAAGTA TGGGGTGAAG GGGACTTTCT TCCTGATAGG GGTGCAGGCG GAGAAATATC CGGGGGTGAT GAAGAAGCTG TACGACGATG GGCACGAGAT TGGGAACCAT ACGTTTACGC ATCCGGATAT TTCGAGCGTT TCGCGTTCGT ACTTCAAGAC AGTTGAGCTG AACCTGACGG AACGATTATT TGCTGCGAAG TTGGGCGTGA AGCCGGTTCT GTTCCGTCCG CCGTACTCGA TTGACCAGGA GCCTGATACC GCTGACCAGG TAGGGCCGCT GGAACTGGCG CAGGACATGG GGTACATCAC CGTTGGCGAC AAGATTGATA CCAACGACTG GCGCGATGAC CCAAGGAAGA CCGCGCCGGA GATGTTCACC GAGGTGATGA ACAATCTGCC GCCATGCAAG CCGACGAACT TCCTGACGTG CGGAAATGTG ATCCTGATGC ACGATGGCGG TGGCGATCGC AGCGAGACAG TGAAGGCGCT GAACTTGATC ATCCCGGCAA TGCAGGCGCG TGGATACAAG ATTGTTCCGG TGTCGGAACT GCTGGGAAAG ACGCGGGCGG AGGTGATGCC GCCTATCAGC AAGAACGAGC GCTGGGCGGC AATGGTGGCG AGCCTGAGCT TCATTCTGTT CGGCGCCGTC AGCCAGTTCA TCATTGCAGT GTTCTTCGTG GGCGACGTAT TGATGACCGG GCGGTTGGTG TTTATCGGCA CGCTGGCGAT TTATGACCGC ATCCGCGGGC CGAGGTTGAC AGCAGACCCG GATTATCGGC CGGCGGTGGC GGTGCTGATT CCCGCATACA ACGAAGAGAA GGTGATCGAG CGCACCGTGC GCAGCGTTCT GGATTCGGAT TACCCGAAGC TGCGGGCGAT CGTGATCGAC GATGGCTCAA AAGATGCGAC GGTGGAGGTT GTGGAGCAAC TGTTCGCGGC GGAGATTGCG AGCGGGAAAG TCACGCTGCT GACGAAGCCG AACTCGGGCA AAGCGGCGGC GCTAAATTAT GGTCTGGAGT TCGTGACGGA GGAGATATTC GTCGGGATTG ATGCGGACAC GATCATTGCG CCGGATGCGA TTGGATTGCT GGTGCCGCAC TTCCAGAACC CGAAGATTGC GGCCATTGCC GGCAATGCGA AGGTCGGGAA CCGCGTGAAT TGGTGGACGC GGTGGCAGGC GCTGGAGTAC ATCACGAGCC AGAATTTCGA ACGGCGTGCG CTCGATGTAT TCGGCGCGGT GAGCGTGGTG CCGGGCGCGA TTGGCGCCTG GCGGACGGAG GCGGTGCTGG CGGCGGGGAA GTATCACCAC GACACAGTAG CGGAAGATGC CGACCTCACG ATGGCGCTGC TGCAAGATGG ATACCGGGTG GAGTACGAAG ATCTGGCTCT GGCATACACC GAGGCGCCTT CGACGGCGAA TGGGCTGATG CGACAGAGGT TCCGGTGGTC GTTCGGAATT ATGCAGTCGG TGTATAAGCA CCGCTCGGCG TTCAAACAAG GTGGGGCGCT GGGATGGTTT GCGCTGCCGA ACGTGGTGAT CTTCCAGATA CTGCTGCCGC TGGTGTCACC CTTCATTGAC CTGATGTTCC TCTTTGGCGC CGGATCGTAC GCGTGGAACC GGTATATGCA TCCGGAATCC ACGGACCCGA GCAGCTTCCA CAAGCTGGTG TTGTACTTTG CGCTGTTCCT GGTGATTGAT TTTGTGGCGT CAACCATAGC GTTCACGCTG GAGAGGCGGC AGCCGGGCGG GCAGAAAGAT TTTTGGCTGT TGGCGCACGT GTGGCTGCAG CGGTTCGCGT ACCGGCAGCT GTTTTCGATC GTGCTGATCA AGACCTTGAA GCGGGCGATT GAAGGCGGAG AGTTCGCCTG GGACAAACTG GAGCGCATGG CGTCGGTAAA ACCTGTAGGA GTTCACACGA AGTAG
|
Protein sequence | MPGPVFYDPE RKRWRRLRMA LDITGVLATL LIVFFIVSIV RNTNVPSLGL TEAKKPYHAL KENQKRKYFR KASTHRKTKQ APSQVQLNTT EGIRAAFYVD WDAASFSSLK QYYPQIDLLF PEFLHVLTED GHIQGVTAEN KLFDVMDASG KVRPVDDKLM PYLKAEKAET EVFPLVNNFD PIANEWKSDI GDFLDDPASR ANFRKQIDAF LGSDRYRGLT LDFEEIPVDS MPGFEALVSE IYQDMHASGK KLYISVPAKN TDFNYEAVAK NSDGLILMNY DEHYPGGPAG AVASQDWFVE NLKFAVKHVP REKIICAISN YGYEWTTIGN AKLPQTAHTV STQEAWTTAE ESDADVELDG DALNPHITFM EGENARHDVW FTDGVTALNQ MRAAQQLGID TFALWRLGSE DRSLWNVWDR PGEQGAPDKL KDVPPGQDVD MEDAGEILQI EERPAPGQRT IKVDAETGLI SEEDFTKIPS PYRIARYGSS DKKIAITFDD GPDPTWTPKI MEVLDKYGVK GTFFLIGVQA EKYPGVMKKL YDDGHEIGNH TFTHPDISSV SRSYFKTVEL NLTERLFAAK LGVKPVLFRP PYSIDQEPDT ADQVGPLELA QDMGYITVGD KIDTNDWRDD PRKTAPEMFT EVMNNLPPCK PTNFLTCGNV ILMHDGGGDR SETVKALNLI IPAMQARGYK IVPVSELLGK TRAEVMPPIS KNERWAAMVA SLSFILFGAV SQFIIAVFFV GDVLMTGRLV FIGTLAIYDR IRGPRLTADP DYRPAVAVLI PAYNEEKVIE RTVRSVLDSD YPKLRAIVID DGSKDATVEV VEQLFAAEIA SGKVTLLTKP NSGKAAALNY GLEFVTEEIF VGIDADTIIA PDAIGLLVPH FQNPKIAAIA GNAKVGNRVN WWTRWQALEY ITSQNFERRA LDVFGAVSVV PGAIGAWRTE AVLAAGKYHH DTVAEDADLT MALLQDGYRV EYEDLALAYT EAPSTANGLM RQRFRWSFGI MQSVYKHRSA FKQGGALGWF ALPNVVIFQI LLPLVSPFID LMFLFGAGSY AWNRYMHPES TDPSSFHKLV LYFALFLVID FVASTIAFTL ERRQPGGQKD FWLLAHVWLQ RFAYRQLFSI VLIKTLKRAI EGGEFAWDKL ERMASVKPVG VHTK
|
| |