Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_5729 |
Symbol | kpsD |
ID | 4042593 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007974 |
Strand | - |
Start bp | 2488303 |
End bp | 2490123 |
Gene Length | 1821 bp |
Protein Length | 606 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637981148 |
Product | polysialic acid transport protein KpsD |
Protein accession | YP_587857 |
Protein GI | 94314648 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACGAA TTGCCTGCTG CCTCGTCGCC GCATCTCTGC TCTTCTCATG GGCAGTGCAC GCGCAGACGC CCAACGTTCC GCTATCCATG CTACCCAACG CACTGCTCGG ACTAACGTCC AGCTCGGATA GCAGTCCCTC GACTGACGTC GCCACTGGCC AAGGCGCGGC AGCACCTGCC TGGCAAAGCG GCCAACCGAG TATCTCTGGC CTGCAATCTC CGATGATTAC GGGCGGCACG CCTTTGCCGG GTACCGGGCA GATCCAGCCG CCGTTGCCGA ATATCGGTGC GCAGGCATAT ATCCCTGCGC AGCGGCTGGG CGACTACGAC GCCAACCAGA AGAGCGAGGT CTTCGGCACT CAGCTATTCA CCGGCGCATT CGCCCGCAGC GCGCCATCCA CCTTCAATCC TGACTACGCT GTTGCCATCG GTGACGGCGT GCGCGTCAGG ATCTGGGGCG GGTTCGATTT TGACAGCGTG CTTACTGTCG ATTCGCAGGG CATGATCTTC CTGCCTCATT GTGGACCAAT GCGTGTAGCT GGCATTCACA ACCGCGACCT GCAAGCGGCG GTTACCGGTG CGCTGCGCAA GGTCTTCAGT AGTAATGTTT CCATCTACGC GAGTCTTGCC TCGGCGCAGC CCGTTCGCGT GCTGGTCTCC GGCTTCGTCC GCCATCCCGG CATGTACGAA GGAACGGGGA ACGACAATGT GCTGCGCTAT CTGGACATGG CCGGTGGCGT AGATCCGGAC CGGGGTTCCT TCCTGGATAT CCAGGTCAAG CGCGGGGCCA CAGTACGCTA CAACGTCGAT CTCTATCGCT TCTTGTTGAA TGGCGACCTG CCGAGTACGC CCCTGACAGA TGGCGACGTG ATCTTCGTTG GTCAGCGGAA GAACACAGTG ATGGTCGGCG GCCTGGCAGC GAGCGCCAGG CGTTTTGAAT TCAACGGTAC CACCACGCTG GCCCAGATCG CAGCCGCTGC GCGGCCGGAC GCCACCTCTA CCAACGTGCG CGTCACGCGT GGATCGGGAA CGGTGCAGCA CGTTGAGTAC TATCCGCTAA GCAAGACACC AGACGTCACC CTGATGAATG GCGATCTCGT CGAGTTCACA GCCGACAAGC GGCCCGGCAC GATTACGGTT CGGGTGGAAG GCGAGCACCT GGGTCCACAG GAGTATGTCG TGCCTTATGG CACCAAGCTG GGCGACCTAC TGGGTCGCGT GGAGATGACA TCCAACTCGC TGCCGGAGAG CACGCAACTC TTTCGTCAAA GCGTGAAGGA TCGGCAGGCA AAGATGCTCG ATACCTCGCT CACGCAGTTG CAAAACAGCG TGCTTACAGC ACGCTCCGGA ACTAACGAGG AATCCCAGCT GCGCCAGCGC GAGGCTGCCC TGGTTCTGCA ATGGGTGGAC CGCGCGCGCC ACATTGATCC CTCCGGTCAA GCAGTCATCG GCCATGGCGA GGAACGCAGC GCCCTGCTGC TGGAGAACGG TGACCGACTG AGGATCCCCA CTCGCAACGA TCTCGTGTTG ATTGGCGGTG AAGTCCTGTT CCCGAACTCG TTCGTGTTCA AACCTGGTGC CAATGTCCAG CGTTACATTC AGCAGGCAGG TGGATACACG CAGAACGCTG ACAGCTCACG CGTCATCATC GCCCATCTTG ACGGTACGTT TGTCGATGCG CGCCAGGACG ATACCGTGAT GCCGGGAGAC CAGATCATGA TCCTGCCCAA GGTGGACTTC AAGACGATGC AGTTTGCCAA GGACGTTTTT TCCATTCTCT ACCAGATCGC CATCGCCGCG AAGGTGGCAA TAGGTCTCTG A
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Protein sequence | MKRIACCLVA ASLLFSWAVH AQTPNVPLSM LPNALLGLTS SSDSSPSTDV ATGQGAAAPA WQSGQPSISG LQSPMITGGT PLPGTGQIQP PLPNIGAQAY IPAQRLGDYD ANQKSEVFGT QLFTGAFARS APSTFNPDYA VAIGDGVRVR IWGGFDFDSV LTVDSQGMIF LPHCGPMRVA GIHNRDLQAA VTGALRKVFS SNVSIYASLA SAQPVRVLVS GFVRHPGMYE GTGNDNVLRY LDMAGGVDPD RGSFLDIQVK RGATVRYNVD LYRFLLNGDL PSTPLTDGDV IFVGQRKNTV MVGGLAASAR RFEFNGTTTL AQIAAAARPD ATSTNVRVTR GSGTVQHVEY YPLSKTPDVT LMNGDLVEFT ADKRPGTITV RVEGEHLGPQ EYVVPYGTKL GDLLGRVEMT SNSLPESTQL FRQSVKDRQA KMLDTSLTQL QNSVLTARSG TNEESQLRQR EAALVLQWVD RARHIDPSGQ AVIGHGEERS ALLLENGDRL RIPTRNDLVL IGGEVLFPNS FVFKPGANVQ RYIQQAGGYT QNADSSRVII AHLDGTFVDA RQDDTVMPGD QIMILPKVDF KTMQFAKDVF SILYQIAIAA KVAIGL
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