| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5547 |
|---|
| Symbol | |
|---|
| ID | 4042408 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 2293864 |
|---|
| End bp | 2294694 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637980965 |
|---|
| Product | putative LuxR family transcriptional regulator |
|---|
| Protein accession | YP_587675 |
|---|
| Protein GI | 94314466 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCAGATGA CGCGTGGGGA GACAGCCAAG ATGGGTGCAG GATCTGCTGA TGACACAAGC
TTCATGGCGG ACGCCGTGGG AGCGATTGGT ACTGAGACGT TTGGATCGCA ACTGGACGTC
TTGGTGGACC ACTATTGCCG CATCGATTTT TGTGCATGCT ATCGAATCGC CTCAGATCGC
GTCGACGTGG TTGCCATGAG CGATCCGAAT CGATTCGAAT CGGCGACGCG CATTGACACC
TATGCAAATG GCAAGCTCTG GGAAACTGAT CCCGCCTTGC ACCAAGCTTT CGTTGGTCTC
GAATCGAATA GTCTCTCGTA TGCACGGCTT AGGCGCACCG ACATCGCGGA TCATCGTCTG
CGGGACGTTG TCTACACGCA TCTCGTGGAC AGACTCCTTG TTTGCTACAA GAACAAGGCA
GCAACCTACG CAATTAGCCT TCTGCGATGG CGGAGCAGTG CACCGTTCCT GTACGGAGAC
ATCGAATCAC TGCTGTCCCG GAGTCCCGTC ATCATGGCCT TGGTAGATCG ACATTTTGTC
TCTTCTGTCA AACACGGCCG TCCGGCGGAC GCGTTCGCAT CAAGGGAGCT GGCTGAGCAG
TGCCTTCGTG CCGTAAGCGG TATGCCAGCG AGAGAGTGCG AGGTCTGCGC GCGGGTCATT
TTTGGCTTCT CCTTGCCGGC AATCGCAAGC GACCTAGGTA TTAGCGTAGA TACCGTAAAG
AGCTACGTGA AACGGGCCTA TCAGAGGATT GAGATAGGCT CTCAGCGCGA GCTGGTTGTT
GCGTATCTCG AGTACTGGGA GGGGTGGGCG CGCTCACGCA TCCTGAGTTG A
|
|---|
| Protein sequence | MQMTRGETAK MGAGSADDTS FMADAVGAIG TETFGSQLDV LVDHYCRIDF CACYRIASDR
VDVVAMSDPN RFESATRIDT YANGKLWETD PALHQAFVGL ESNSLSYARL RRTDIADHRL
RDVVYTHLVD RLLVCYKNKA ATYAISLLRW RSSAPFLYGD IESLLSRSPV IMALVDRHFV
SSVKHGRPAD AFASRELAEQ CLRAVSGMPA RECEVCARVI FGFSLPAIAS DLGISVDTVK
SYVKRAYQRI EIGSQRELVV AYLEYWEGWA RSRILS
|
|---|
| |