| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5417 |
|---|
| Symbol | |
|---|
| ID | 4042278 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 2162831 |
|---|
| End bp | 2163739 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637980835 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_587545 |
|---|
| Protein GI | 94314336 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.826157 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.396347 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTCC ATCAATTGCG CGCGTTGGCC GCCGTCTCCG AGACGGGCAG CATGCAGGAG
GCATCCCGCC TGCTCCACGT CACCCAGCCA GCACTGAGCA AGGCCATCAA GGAACTGGAA
GCCAGCGTGG GTGCCGCGCT GTTCGTGCGC ACGAACAAGG GTGTGCAACT CACACCATAC
GGGCAACGAC TGGTCGGCCA CGCCCGCCTG ATCAGCGAGA ACGTCAGGCG CGCGCGCCAG
GATCTCGAGG ACATGAAAGG GACCGTGGTC AGCGAGATCA CCGTTGCCGT CACGCCGGTC
ACCGCCCTGC TGCGCCCGGC GGGCGCCTGC ATCACGGCGT TCCGGCGCGA TTTCCCGAGC
GCACAGTTGC GCGTGCAGGA AATGCGGCCC GCGCAAATGC TCGAGCACCT GCGCGAAGGC
ACCATCGACT TCGCGCTGAC CTCCCAGTCC CTGGCCACCG CGCATGGCCT CGACTGCGCC
CAGGCTTGCC ACGTGCCGAC GCTGATTGCT GGCCGCAAGG ATCATCCGTT GCGCAAGACG
CGCTCGCTGG GCGCGTTGCT GGAGGCGGAG TGGCTCGTAC TCGATCCGCT CTCCGATACC
GGCACGCCGT TTCATCAGCT CTTCGTCATC AACGGCATGA CGCTGCCGTC GCGCGTTGTC
GAATGCACGT CGATGACCCT GGCCCTGGAG ATGTGCCGGC AGAGCGACCT GCTGGTGCTG
CTCTCCGAGG AATCCCGCCG CAGTCGCTAT CTCGTCGAAA CCATGGACTT CATCGACGTC
GACGAGACCA TGCCGGATCG CACCATCGCG CTGGTATCGC GTGACCGCCA CACCCTCACC
TGGGCGGCGG CACGGCTGCA CGATGCCTTG CTGGACGCAT TGCGCCAGGA GTTTCCCACG
GCGGATTGA
|
|---|
| Protein sequence | MKLHQLRALA AVSETGSMQE ASRLLHVTQP ALSKAIKELE ASVGAALFVR TNKGVQLTPY
GQRLVGHARL ISENVRRARQ DLEDMKGTVV SEITVAVTPV TALLRPAGAC ITAFRRDFPS
AQLRVQEMRP AQMLEHLREG TIDFALTSQS LATAHGLDCA QACHVPTLIA GRKDHPLRKT
RSLGALLEAE WLVLDPLSDT GTPFHQLFVI NGMTLPSRVV ECTSMTLALE MCRQSDLLVL
LSEESRRSRY LVETMDFIDV DETMPDRTIA LVSRDRHTLT WAAARLHDAL LDALRQEFPT
AD
|
|---|
| |