| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5315 |
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| Symbol | |
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| ID | 4042176 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | + |
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| Start bp | 2022282 |
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| End bp | 2023901 |
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| Gene Length | 1620 bp |
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| Protein Length | 539 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637980733 |
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| Product | putative major facilitator superfamily transporter |
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| Protein accession | YP_587443 |
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| Protein GI | 94314234 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00425912 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.639977 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCAAT CCGCCTCGAC GGCAAACGCT CCCGCCTCCA CAGGTACCTT CGCGCCGCTT
GCGCAATCGA CCTTCGCGGT CCTGTGGGTA GCGACGATCC TCGGCAATAT CGGCAGCTTC
ATGCGCGACG TCGCCAGCGC ATGGCTGGCC ACCGACCTGT CGACCTCGCC GGCCGCGGTG
GCCACCATCC AGGCTGCATC GACGCTGCCA GTGTTCCTGC TCGCGATTCC CGCCGGCGTG
CTGTCCGACA TCCTTGACCG CCGCCGCTTC CTGATCGTGA TCCAGCTCTG CCTGGCCTTG
GTCAGCGGCT CGCTGATGCT GCTGGCATGG CGACAGTCGC TGACGATCGA ACTCCTGATC
GCGCTGGCGT TCGCCGGCGG CATCGGTTCG GCGATGATGG GGCCGACCTG GCAGTCGATC
GTGCCGGAAC TGGTTCCCGC CAACACGCTG CGGCAGGCCG TGGCGCTCAA CTCGCTTGGC
GTGAACATCG CGCGCGCCAT CGGGCCGGCC ACCGGCGGCC TGCTGCTGGC TGCGTTCGGC
GCGGCCGCGA CTTACGGCGT GGACCTGCTC AGCTACGTGT TCGTGGTTGC CGCGCTGATC
TGGTGGCATC GACCCCAGCG ACCGGTCGAC CCGCTACGCG AGCACTTCTT CAGCGCGGCC
CGCGCCGGGC TGCGTTTCAC GCGGGCGCAC AGCAAGCTCC ATGTCGTGCT GGCCCGTACC
GCCGTGCATT TCGCGTTCGG CAGCAGTGTG TGGGCACTGT TGCCGCTCGT GGCGCGCAAG
CTGCTCCATG GCAGCGCGGG GCTCTACGGC GTGATGCTCG GGGCGGTCGG GGTGGGCGCA
ATTCTTGGCG CGTTGCTCAT GCCGCGTCTG CAGAAGCGGC TCGACGCCGA CGGGATGGTG
CTGCTGTCCG CCATCGTCAC GGCCGTCGTG ATGGCCGCGC TCTCCGTCGC GCCACCCGTC
TGGCTGGCGC TGGTGCTGCT GTTGCTGTTG GGCGCGGCAT GGATCATGGC GCTGACCACG
TTCGGCGGCG TGGCGCAAGC CATCCTGCCC AACTGGGTGC GTGGCCGCGC GCTGGCGGTC
TACCAGATGG TCTTCAACGG CGCGCTGGCC GGTGGCAGCC TGCTCTGGGG CTTCGTGGCG
CAGGCGCTCG GCACGCCCCC CGCGCTGCTG ATCGCCGGCT CGGGCCTGGT AGTCGCCGCG
CTGGCGCTGC ACCGGCTGCG TCTGCCGCAC GGCGAAGACG ACCTTGGCCC GGCCGGCCAC
TGGCCCGAGC CCGAAATGGC CGACGAGATC GCGCACGATC GCGGCCCGGT GATGATCCTG
ATCGAGTACC TGATTGCCCC GGCCAACCGG GACGGCTTCC TGCACGCCGT GCACCGGCTC
TCCGAAGAGC GGCTGCGCGA TGGCGCATTC AGTTGGGGCG TGATGGAAGA CCCCACCAAT
CCCGAATTGA TGACCGAGTG GTTTCTGGTC GAGTCATGGG CCGAGCACCT GCGGCAACAC
CGCCGCGTGC CGAACGCCGA TGCCGACCTG CAGCGAGAAG TGACCGCGTT CCATGGTGGC
ACGACGCCAC CGCGTGTGCG GCATCTGCTG GGCGTGGGAC TGCCACCGAA CAAGCGATGA
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| Protein sequence | MTQSASTANA PASTGTFAPL AQSTFAVLWV ATILGNIGSF MRDVASAWLA TDLSTSPAAV
ATIQAASTLP VFLLAIPAGV LSDILDRRRF LIVIQLCLAL VSGSLMLLAW RQSLTIELLI
ALAFAGGIGS AMMGPTWQSI VPELVPANTL RQAVALNSLG VNIARAIGPA TGGLLLAAFG
AAATYGVDLL SYVFVVAALI WWHRPQRPVD PLREHFFSAA RAGLRFTRAH SKLHVVLART
AVHFAFGSSV WALLPLVARK LLHGSAGLYG VMLGAVGVGA ILGALLMPRL QKRLDADGMV
LLSAIVTAVV MAALSVAPPV WLALVLLLLL GAAWIMALTT FGGVAQAILP NWVRGRALAV
YQMVFNGALA GGSLLWGFVA QALGTPPALL IAGSGLVVAA LALHRLRLPH GEDDLGPAGH
WPEPEMADEI AHDRGPVMIL IEYLIAPANR DGFLHAVHRL SEERLRDGAF SWGVMEDPTN
PELMTEWFLV ESWAEHLRQH RRVPNADADL QREVTAFHGG TTPPRVRHLL GVGLPPNKR
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