| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5033 |
|---|
| Symbol | cusA |
|---|
| ID | 4041895 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 1719297 |
|---|
| End bp | 1722464 |
|---|
| Gene Length | 3168 bp |
|---|
| Protein Length | 1055 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637980454 |
|---|
| Product | copper and silver tricomponent efflux pump cusA |
|---|
| Protein accession | YP_587164 |
|---|
| Protein GI | 94313955 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.252663 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGCAC GCATCATCCT CGCGTCGATC CGCAACCGCT TCCTGGTGCT GCTGGCCACG
ATCATGCTGA CGGCCTGGGG GCTATGGGCA GTCGGCACCA CGCCGCTCGA CGCGCTGCCG
GATCTGTCCG ATACCCAGGT CATCATCCGC ACCCCGTTCC CGGGCCAGGC GCCGCAGATC
GTCGAGAACC AGGTCACCTA CCCGCTCACC ACGACGATGT TGTCCGTGCC GGGGGCCAAG
ACCGTGCGCG GCTATTCCTT CTTCGGCGAT TCCTTTGTCT ACGTGCTGTT CGAGGACGGA
ACCGACCCAT ACTGGGCCCG CTCCCGCGTG CTGGAGTACC TGAACCAGGT GCAGTCACGT
CTGCCGGCGG CCGCCAGGCC CGCACTGGGG CCCGACGCCA CCGGTGTGGG ATGGGTCTAT
GAGTATGCGC TGGTCGATCG CACCGGCAAG CACGACCTGA GCCAGTTGCG CGTGTTGCAG
GACTGGTTCC TGCGCTTCGA GCTGAAGTCG CTGCCGAACG TCTCCGAGGT AGCCTCGCTG
GGCGGCATGG TGCGGCAATA CCAGGTAGTG CTGAAGCCTG ACCGCCTACG TGCCTACAAC
CTTCCGCAGG CGAAGGTGAT CGCCGCGATT CGTGGCGCCA ACCAGGAGGC AGGCGGCTCG
GTGCTGGAGC TAGGCGAAGC CGAGTATATG GTCAGGGCAT CGGGCTACCT GAAGACACTC
GACGATTTCC GGCAGATTCC AATCGAGACC AGCGCGGCCG GTGTTCCGGT GCGCCTTGGC
GACGTCGCGA CGATCCAGTT CGGGCCCGAG ATGCGACGTG GCATCTCCGA CCTCAACGGC
GAAGGCGAAG TGACGGGCGG CGTCATCGTG ATGCGTTCGG GCAAGAACGC GCTGGAGACG
ATCGACGCCG TCAAGGCCAA ACTTGCAGTG CTGAAGAAGA GCCTGCCCGC CGGCGTCGAG
ATTGTCACGA CCTACGACCG CTCCGCGCTG ATTCATCGCG CGGTGAACAA CCTCTCGTAC
AAACTGGCCG AAGAGTTCGT GGTCGTCGCG CTGGTCTGTC TGATCTTCCT GTTCCACCTG
CGCTCCGCGC TGGTTGCCAT CGTGTCGCTG CCGCTTGGCG TGCTGGCTGC CTTCCTCGTC
ATGCGGTATC AGGGCGTCAA CGCCAACATC ATGTCGCTCG GCGGCATCGC CATTGCAGTC
GGCGCCATGG TCGACGCCGC AGTGGTAATG ATCGAAAACG CGCACAAGCA TCTGGAACGC
TGGCATGCCG ATCACCCCGG GCGGCCACTC TCCGGCGACG ACCGCTGGCG CGTGATTGGC
GCATCCGCAG CGGAAGTCGG TCCCGCGCTG TTTTTCTCGC TGTTGATCAT CACGCTGTCT
TTCATCCCGG TGTTCACGCT GGAAGCACAG GAAGGCAAGA TGTTCTCGCC GCTGGCCTTC
ACGAAGACCT ACTCGATGGC GGCTGCGGCA GGCCTCTCGG TGACACTGGT GCCGGTGCTG
ATGGGTTACC TGATTCGCGG CCGCATTCCC GCCGAGCAGG CCAACCCGCT GAACCGCTGG
CTCATTCGCG CCTACCAGCC AATCCTGACC CGCGTGCTGG CCTATCCGCG CGCGACCATC
GCACTGGCGG TTGTTGCGCT GGTGGCCACC GCCTGGCCAA TCATGCGGAT TGGCGGCGAG
TTCATGCCGC CGCTCGATGA AGGCGATCTG CTCTACATGC CCTCCGCTTT GCCCGGCCTT
TCCGCTGGCA AGGCGGCGCA ATTGCTGCAG CAGACCGATC GGCTGATCAA GTCGGTGCCG
GAAGTCGCCA CGGTGCAGGG CAAGGCCGGC CGTGCCGATT CGGCCACCGA CCCGGCCCCG
CTGGAGATGT TCGAAACCAC AATCCAGTTC AAGCCACGCG ACCAGTGGCG CCCGGGCATG
ACACCCGACA AACTCGTCGA AGAACTTGAT CGCGTGGTGA AGATTCCGGG ACTTTCCAAC
ATCTGGGTGC CACCGATCCG CAACCGCATC GACATGCTGG CCACCGGGAT CAAGAGCCCG
GTTGGCATCA AGGTGGCAGG CACCGACCTG AAGGAGATCG ATCGGCTTGC CACCCGCATC
GAAGAAGCCG TGAAGCCCGT TCCCGGGGTC ACCTCGGCAC TGGCGGAACG CCTGACCGGC
GGGCGCTATA TCGACGTTGA CATCGACCGC GCGGCCGCTG GCCGGTACGG GCTCAATATC
GGCGATGTGC AGGCCGTCGT CTCCTCGGCG ATTGGTGGCG AAAACATCGG CGAAGTGGTC
GACGGGCTGG CCCGCTATCC CATCAACGTG CGCTACCCGC GCGACTATCG CGATTCGGTC
GAGCAACTGC GGAGCCTGCC CATCGTGACT GACCGTGGCC AGCAGATCGT GCTTTCCGAC
GTCGCCCGCA TCCGAGTGGA ACAGGGTCCG CCGATGCTGC GCAGCGAGAA CGCACGGCTG
TCGGGGTGGA TCTACGTCGA CATCCGTGGG CGCGACCTGC GCTCCGCGGT GCGCGACATG
CAGGCGGCGG TGAGCAAGGC GGTACCGATG CCTGCGGGCT ATTCGCTGAG CTGGTCCGGT
CAGTTCGAGT ATCTGGAACG TGCCGCGGCG AAGATGAAGG TAGTGGTGCC GTTCACGCTG
CTGATCATCT TCGTGCTGCT CTACCTGGTC TTCGGTCGAC TCGACGAGGC ACTGCTGATC
ATGGGCACGC TGCCCCTGGC GCTGATCGGC GGCTTCTGGC TGCTTTATCT GCTCGGCTAC
AACCTGTCGG TAGCCGGCGT GGTCGGCTTC ATCGCGCTGG CCGGCGTTGC CGCGGAGTTC
GGCGTGATCA TGCTGCTCTA TCTCAAGCAC GCCTGGGAGG ATAGCCAGGC ACGCGGCATC
ACCGACATCA ACGCCCTGCT CGCCGCCATC CAGGAAGGCG CTGTGCAGCG CGTGCGGCCC
AAGGCGATGA CCGTCGCCGT CATCCTGGCA GGCCTGATCC CGATCATGTG GTCACACGGC
ACCGGCTCCG AAGTCATGCA GCGCATTGCG GCGCCGATGG TTGGCGGCAT GGTGACGGCG
CCGCTGCTGT CGCTGTTCGT GGTGCCCGCC GTGTACCTGT TGATCCGCCG TCGCGAAACG
AAGACTTCCC CATCATTCAC TCACACGTCC GTCAAGGAGC AAGCATGA
|
|---|
| Protein sequence | MIARIILASI RNRFLVLLAT IMLTAWGLWA VGTTPLDALP DLSDTQVIIR TPFPGQAPQI
VENQVTYPLT TTMLSVPGAK TVRGYSFFGD SFVYVLFEDG TDPYWARSRV LEYLNQVQSR
LPAAARPALG PDATGVGWVY EYALVDRTGK HDLSQLRVLQ DWFLRFELKS LPNVSEVASL
GGMVRQYQVV LKPDRLRAYN LPQAKVIAAI RGANQEAGGS VLELGEAEYM VRASGYLKTL
DDFRQIPIET SAAGVPVRLG DVATIQFGPE MRRGISDLNG EGEVTGGVIV MRSGKNALET
IDAVKAKLAV LKKSLPAGVE IVTTYDRSAL IHRAVNNLSY KLAEEFVVVA LVCLIFLFHL
RSALVAIVSL PLGVLAAFLV MRYQGVNANI MSLGGIAIAV GAMVDAAVVM IENAHKHLER
WHADHPGRPL SGDDRWRVIG ASAAEVGPAL FFSLLIITLS FIPVFTLEAQ EGKMFSPLAF
TKTYSMAAAA GLSVTLVPVL MGYLIRGRIP AEQANPLNRW LIRAYQPILT RVLAYPRATI
ALAVVALVAT AWPIMRIGGE FMPPLDEGDL LYMPSALPGL SAGKAAQLLQ QTDRLIKSVP
EVATVQGKAG RADSATDPAP LEMFETTIQF KPRDQWRPGM TPDKLVEELD RVVKIPGLSN
IWVPPIRNRI DMLATGIKSP VGIKVAGTDL KEIDRLATRI EEAVKPVPGV TSALAERLTG
GRYIDVDIDR AAAGRYGLNI GDVQAVVSSA IGGENIGEVV DGLARYPINV RYPRDYRDSV
EQLRSLPIVT DRGQQIVLSD VARIRVEQGP PMLRSENARL SGWIYVDIRG RDLRSAVRDM
QAAVSKAVPM PAGYSLSWSG QFEYLERAAA KMKVVVPFTL LIIFVLLYLV FGRLDEALLI
MGTLPLALIG GFWLLYLLGY NLSVAGVVGF IALAGVAAEF GVIMLLYLKH AWEDSQARGI
TDINALLAAI QEGAVQRVRP KAMTVAVILA GLIPIMWSHG TGSEVMQRIA APMVGGMVTA
PLLSLFVVPA VYLLIRRRET KTSPSFTHTS VKEQA
|
|---|
| |