| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4860 |
|---|
| Symbol | |
|---|
| ID | 4041722 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 1518638 |
|---|
| End bp | 1521052 |
|---|
| Gene Length | 2415 bp |
|---|
| Protein Length | 804 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637980281 |
|---|
| Product | acyl-homoserine lactone acylase |
|---|
| Protein accession | YP_586991 |
|---|
| Protein GI | 94313782 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2366] Protein related to penicillin acylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.357957 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.272976 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCAC GCATTGCGCG CGGCGCGGTC GTGCTTGGCA CGGCTACGCT GGCGGCTGCG
GCCTTGAGCG GTTGCGCCAC TGGCAACGGT AACTGGAGCG AGCAGGGCCT TAGCGCCGAA
ATCCGCCGCA CGTCCTACGG CATTCCCCAC ATCCGCGCCA ACGACTACGC CAGCGTCGCC
TTCGGCATGG CGTACGCCTA TGCGCAGGAC AACGTCTGCC TGATGGCCAG CCAGGTGGTG
ACGGTCAGCG GCGAGCGTTC GGCGACGTTC GGGCCGGACG GCACCACCGA GGTGTCCTTC
AAGCCGATGC GCAATGCGGA CGCCGATGCG TTCTTCCGCG CCATTCTCGA CGACGATGCC
CTGCAGGCCA GCGCGGCAAG GCAATCGCCC GAAGCGCATG AACTGCTGCG TGGCTATATC
GCCGGCTACA ACCGTTACCT GCGCGATACG CCGCCGTCGA AGCGCCCGGC CGCCTGCCGC
GATGCGGCGT GGGTGCGCCC GATCACAGCA CTCGACATGG CGCGGCTTGC CGAGGAGAAG
AGTATCCAGG CCAGCGCCGG CGCGCTAGCG GCCGGCATCG TCGCGGCTGC GCCGCCACAG
GTCACCAAGT CCGCCGCCAA GTCCGCCGCG CTACCCGCAC GCATCGATAT CGCCGCGATC
GATTTCGAGG CGGTGAACCG CGACCTGCAG CTGCTCGATC CGCCGATCGG CAGCAATGGC
TGGGCGTTCG GCAAGGCGGC CACGGCAGAT GGTTCCGGCC TGCTGCTTGG CAACCCGCAC
TTCCCCTGGA CGACCACCAA CCGCTTCTAT CAGGCGCACC TGACGGTGCC AGGCAAGCTC
GACGTCATGG GCGCGTCGAT TGCCTCGTTC CCGATCATCA GCATCGGCTT CAACAAGGAC
GTGGCCTGGA CGCACACCGT TTCCACGGCG CGTCGCTTCA CGCTGTTCGA ACTGAAGCTG
GCCGATGGGG ATCCGACCAC CTACCTGATC GACGGCAAGC CGCGCAAGAT GACCACCAAG
ACGGTCAGCT ATGCGGCAAA GCTGGCCGAT GGCCGTACCG AGCAGCGTTC GCATACGTTC
TACATGACCG AGTACGGTCC GGTCGTGGCC ATGCCGCAGG CAGGGCTGCC GTGGACGGCG
CAGAAGGCGT ACACGCTGCG GGACGCCAAC CAGAACAACA CGCGCTCGAT CGACACGTGG
CTCGATATCG CGCGGGCGCA TAACGTGGGC GAGATCCGCA CCGCGATCGG CAACCTGGGC
ATTCCGTGGG TCAACACGAT TGCCACCGAC CGTTCGGGCC GCGCGATGTT TGCCGACGTC
TCGGTCACCC CCAATGTCTC GACCTCGATG CTGGAAAGCT GCGCGCCGGC CGGCGACGGT
GCCGTGTTGG CGAAGAAGCT GATGGCCGGC ACGGGTATGG TGCTGCTGGA CGGCTCGCGC
GGTGTCTGCA ACTGGACTGT CGATCCGGCG TCGCCGGTGC CTGGTCTGGT CCCGCCATCG
GCCATGCCGG TGCTGGAACG CGACGACTTC GTGGCCAACA GCAATGACAG CTCGTGGTTG
GCGAATCCCG CGCAGAAGAT GGAGGGCTTT TCTCCGGTGC TCGGGCCGCA GGCGGTGCCG
CAGCGCTTGC GCACGCGTGT TGGCTTGATG GAGATCGGCA AGCGCCTGAA CGGTGTGGAC
GGCCTGCCGG GCAACCGCTT CGACATCCAG AACCTGCAGA CGGTGCTGTT CCGAGATCGC
AATCTGGCTG CCGAGCTTGT GCTGGACGAC CTGTTGCGGG CCTGCCGCAC CAAGGCTGTT
CAGGGCGACA GCGATCTGCG TGACGGGTGC ACGGCGCTGG GCAAGTGGGA TCGCCGCAGC
AATCTGGAAA GCCGGGCCGC GCCGCTGTTC CGCGAGTTCT GGATGCGCGC GCACGTCATT
CCGAACGTGT ACGCCATCGC CTTCAATCCT GCCGATCCGG TTAATACGCC GCGTGGCCTG
CGCATGCAGG ACGCTACGGT GAACACGGCC GTGCTGAAGG CGCTCAAGGA TGCCGTGGGG
GCCATGCGCA AGGCTGGCTT CGCGCTGGAT GCCCCGCTTG GCGAGGTGCA GGCCGCGAAG
TCGCCCAACG GCCTGATTCC GCTGCACGGT GGGGAGGAGT ACGAGGGCGT GCTGAACAAG
CTCCAGAGCC AGCCGGTGTC GGCCGATGGC CTGAAGGTGT TCTTCGGAAC GAGCTATGTG
CAGACCGTGG GTTTCGATGC CAATGGGCCG GTGGCGCAGG CGCTGCTGGT CTACGGCCAG
TCGATCGACC CGGCTTCGCC CCATGCCTGG GACCAGATGC GGCAGTTCTC GGCCAAGCGC
TGGATTTCGC TGCCGTTCTC GGAGCAGGCC ATCGCGGCGG ATCCGCAACT GAGCGTAACC
AAACTGAGCC AGTGA
|
|---|
| Protein sequence | MTPRIARGAV VLGTATLAAA ALSGCATGNG NWSEQGLSAE IRRTSYGIPH IRANDYASVA
FGMAYAYAQD NVCLMASQVV TVSGERSATF GPDGTTEVSF KPMRNADADA FFRAILDDDA
LQASAARQSP EAHELLRGYI AGYNRYLRDT PPSKRPAACR DAAWVRPITA LDMARLAEEK
SIQASAGALA AGIVAAAPPQ VTKSAAKSAA LPARIDIAAI DFEAVNRDLQ LLDPPIGSNG
WAFGKAATAD GSGLLLGNPH FPWTTTNRFY QAHLTVPGKL DVMGASIASF PIISIGFNKD
VAWTHTVSTA RRFTLFELKL ADGDPTTYLI DGKPRKMTTK TVSYAAKLAD GRTEQRSHTF
YMTEYGPVVA MPQAGLPWTA QKAYTLRDAN QNNTRSIDTW LDIARAHNVG EIRTAIGNLG
IPWVNTIATD RSGRAMFADV SVTPNVSTSM LESCAPAGDG AVLAKKLMAG TGMVLLDGSR
GVCNWTVDPA SPVPGLVPPS AMPVLERDDF VANSNDSSWL ANPAQKMEGF SPVLGPQAVP
QRLRTRVGLM EIGKRLNGVD GLPGNRFDIQ NLQTVLFRDR NLAAELVLDD LLRACRTKAV
QGDSDLRDGC TALGKWDRRS NLESRAAPLF REFWMRAHVI PNVYAIAFNP ADPVNTPRGL
RMQDATVNTA VLKALKDAVG AMRKAGFALD APLGEVQAAK SPNGLIPLHG GEEYEGVLNK
LQSQPVSADG LKVFFGTSYV QTVGFDANGP VAQALLVYGQ SIDPASPHAW DQMRQFSAKR
WISLPFSEQA IAADPQLSVT KLSQ
|
|---|
| |